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Add configuration files and HTTP requests setup
Included configuration properties for development environments in `application-bdc-dev.properties` and added a sample `weights.csv` file. Also, created HTTP request scripts for dictionary API and provided Docker commands for local development in the README.
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## Docker commands for local development | ||
### Docker build | ||
```bash | ||
docker build --no-cache --build-arg SPRING_PROFILE=bdc-dev -t weights:latest . | ||
``` | ||
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### Docker run | ||
You will need a local weights.csv file. | ||
```bash | ||
docker run --rm -t --name dictionary-weights --network=host -v ./weights.csv:/weights.csv weights:latest | ||
``` |
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dictionaryweights/src/main/resources/application-bdc-dev.properties
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spring.application.name=dictionaryweights | ||
spring.main.web-application-type=none | ||
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spring.datasource.url=jdbc:postgresql://localhost:5432/dictionary_db?currentSchema=dict | ||
spring.datasource.username=username | ||
spring.datasource.password=password | ||
spring.datasource.driver-class-name=org.postgresql.Driver | ||
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weights.filename=/weights.csv |
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concept_node.DISPLAY,2 | ||
concept_node.CONCEPT_PATH,2 | ||
dataset.FULL_NAME,1 | ||
dataset.DESCRIPTION,1 | ||
parent.DISPLAY,1 | ||
grandparent.DISPLAY,1 | ||
concept_node_meta_str,1 |
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# curl 'https://dev.picsure.biodatacatalyst.nhlbi.nih.gov/picsure/proxy/dictionary-api/concepts?page_number=1&page_size=1' | ||
# -H 'origin: https://dev.picsure.biodatacatalyst.nhlbi.nih.gov' | ||
# -H 'referer: https://dev.picsure.biodatacatalyst.nhlbi.nih.gov/' | ||
# --data-raw '{"facets":[],"search":"","consents":[]}' | ||
POST http://localhost:80/concepts?page_number=1&page_size=100 | ||
Content-Type: application/json | ||
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{"facets":[],"search":"age","consents":[]} | ||
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### | ||
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POST http://localhost:80/search | ||
Content-Type: application/json | ||
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{"query":{"searchTerm":"AGEDIANA","includedTags":[],"excludedTags":[],"returnTags":"true","offset":0,"limit":5}} |
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spring.application.name=dictionary | ||
spring.datasource.url=jdbc:postgresql://localhost:5432/dictionary_db?currentSchema=dict | ||
spring.datasource.username=username | ||
spring.datasource.password=password | ||
spring.datasource.driver-class-name=org.postgresql.Driver | ||
server.port=80 | ||
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dashboard.columns={abbreviation:'Abbreviation',name:'Name',clinvars:'Clinical Variables'} | ||
dashboard.column-order=abbreviation,name,clinvars | ||
dashboard.nonmeta-columns=abbreviation,name | ||
dashboard.enable.extra_details=true | ||
dashboard.enable.bdc_hack=true | ||
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filtering.unfilterable_concepts=stigmatized |