refactor(#684): rename CpicLookup to LookupInformation

app/integration_test/drugs_test.dart

@@ -49,7 +49,7 @@ void main() {
                 warningLevel: WarningLevel.green))
       ]);
   UserData.instance.lookups = {
-    'CYP2C9': CpicLookup(
+    'CYP2C9': LookupInformation(
         gene: 'CYP2C9',
         phenotype: 'Normal Metabolizer',
         variant: '*1/*1',

app/lib/common/models/drug/drug_inhibitors.dart

@@ -83,7 +83,7 @@ List<String> inhibitorsFor(String gene) {
   return _drugInhibitorsPerGene[gene] ?? [];
 }
 
-bool canBeInhibited(CpicLookup lookup) {
+bool canBeInhibited(LookupInformation lookup) {
   return inhibitableGenes.contains(lookup.gene) &&
     lookup.lookupkey != '0.0';
 }

app/lib/common/models/module.dart

@@ -5,7 +5,7 @@ export 'drug/drug_inhibitors.dart';
 export 'drug/guideline.dart';
 export 'drug/warning_level.dart';
 export 'metadata.dart';
-export 'userdata/cpic_lookup.dart';
 export 'userdata/gene_result.dart';
 export 'userdata/genotype.dart';
+export 'userdata/lookup_information.dart';
 export 'userdata/userdata.dart';

app/lib/common/models/userdata/cpic_lookup.dart → app/lib/common/models/userdata/lookup_information.dart

@@ -3,20 +3,20 @@ import 'package:hive/hive.dart';
 
 import 'genotype.dart';
 
-part 'cpic_lookup.g.dart';
+part 'lookup_information.g.dart';
 
 @HiveType(typeId: 2)
 @JsonSerializable()
-class CpicLookup implements Genotype {
-  CpicLookup({
+class LookupInformation implements Genotype {
+  LookupInformation({
     required this.gene,
     required this.phenotype,
     required this.variant,
     required this.lookupkey,
   });
 
-  factory CpicLookup.fromJson(dynamic json) {
-    return _$CpicLookupFromJson({
+  factory LookupInformation.fromJson(dynamic json) {
+    return _$LookupInformationFromJson({
       ...json,
       // transform lookupkey map to string
       'lookupkey': json['lookupkey'][json['genesymbol']],

app/lib/common/models/userdata/userdata.dart

@@ -118,7 +118,7 @@ class UserData {
       UserData.instance.geneResults?[gene]?.allelesTested;
 
   @HiveField(1)
-  Map<String, CpicLookup>? lookups;
+  Map<String, LookupInformation>? lookups;
 
   static MapEntry<String, String>? overwrittenLookup(
     String gene,
@@ -223,7 +223,7 @@ Future<void> initUserData() async {
   try {
     Hive.registerAdapter(UserDataAdapter());
     Hive.registerAdapter(GeneResultAdapter());
-    Hive.registerAdapter(CpicLookupAdapter());
+    Hive.registerAdapter(LookupInformationAdapter());
   } catch (e) {
     return;
   }

app/lib/common/utilities/genome_data.dart

@@ -21,6 +21,12 @@ Future<Response> getDiplotypes(String? token, String url) async {
   return get(Uri.parse(url), headers: {'Authorization': 'Bearer $token'});
 }
 
+String getGenotypeKey(Genotype genotype) {
+  // If gene is unique return gene; else return gene plus first part of variant
+  // (before space)
+  return genotype.gene;
+}
+
 Future<void> _saveDiplotypeAndActiveDrugsResponse(
   Response response,
   ActiveDrugs activeDrugs,
@@ -46,32 +52,32 @@ Future<void> fetchAndSaveLookups() async {
   if (response.statusCode != 200) throw Exception();
 
   // the returned json is a list of lookups which we wish to individually map
-  // to a concrete CpicLookup instance, hence the cast to a List
+  // to a concrete LookupInformation instance, hence the cast to a List
   final json = jsonDecode(response.body) as List<dynamic>;
-  final lookups = json.map(CpicLookup.fromJson);
-  final usersDiplotypes = UserData.instance.geneResults;
-  if (usersDiplotypes == null) throw Exception();
+  final lookups = json.map(LookupInformation.fromJson);
+  final geneResults = UserData.instance.geneResults;
+  if (geneResults == null) throw Exception();
 
   // use a HashMap for better time complexity
-  final lookupsHashMap = HashMap<String, CpicLookup>.fromIterable(
+  final lookupsHashMap = HashMap<String, LookupInformation>.fromIterable(
     lookups,
     key: (lookup) => '${lookup.gene}__${lookup.variant}',
     value: (lookup) => lookup,
   );
   // ignore: omit_local_variable_types
-  final Map<String, CpicLookup> matchingLookups = {};
+  final Map<String, LookupInformation> matchingLookups = {};
   // extract the matching lookups
-  for (final diplotype in usersDiplotypes.values) {
+  for (final geneResult in geneResults.values) {
     // the gene and the genotype build the key for the hashmap
-    final key = '${diplotype.gene}__${diplotype.variant}';
+    final key = '${geneResult.gene}__${geneResult.variant}';
     final lookup = lookupsHashMap[key];
     if (lookup == null) continue;
     // uncomment to print literal mismatches between lab/CPIC phenotypes
-    // if (diplotype.phenotype != lookup.phenotype) {
+    // if (geneResult.phenotype != lookup.phenotype) {
     //   print(
-    //       'Lab phenotype ${diplotype.phenotype} for ${diplotype.gene} (${diplotype.genotype}) is "${lookup.phenotype}" for CPIC');
+    //       'Lab phenotype ${geneResult.phenotype} for ${geneResult.gene} (${geneResult.genotype}) is "${lookup.phenotype}" for CPIC');
     // }
-    matchingLookups[diplotype.gene] = lookup;
+    matchingLookups[geneResult.gene] = lookup;
   }
 
   // uncomment to make user have CYP2D6 lookupkey 0.0

app/lib/main.dart

@@ -5,6 +5,7 @@ import 'common/module.dart';
 
 Future<void> main() async {
   await initServices();
+  // Maybe refresh lookups on app start
   await fetchAndSaveLookups();
   runApp(
     ChangeNotifierProvider(

app/lib/report/pages/gene.dart

@@ -10,7 +10,7 @@ class GenePage extends HookWidget {
           initialFilter: FilterState.forGene(lookup.gene),
         );
 
-  final CpicLookup lookup;
+  final LookupInformation lookup;
   final DrugListCubit cubit;
 
   @override

app/lib/report/pages/report.dart

@@ -17,8 +17,8 @@ class ReportPage extends StatelessWidget {
     final notTestedString = context.l10n.general_not_tested;
     final userLookus = CachedDrugs.instance.allGuidelineGenes.map(
       (gene) => UserData.instance.lookups![gene] ??
-        // Add CpicLookup for unmatched lookup
-        CpicLookup(
+        // Add LookupInformation for unmatched lookup
+        LookupInformation(
           gene: gene,
           // phenotype will be overwritten with phenotype from lab or inhibited
           // phenotype using PhenotypeInformation in GeneCard and GenePage
@@ -57,7 +57,7 @@ class ReportPage extends StatelessWidget {
 class GeneCard extends StatelessWidget {
   const GeneCard(this.lookup, { super.key });
 
-  final CpicLookup lookup;
+  final LookupInformation lookup;
 
   @override
   Widget build(BuildContext context) {