Include our modification of scispacy in ext #9
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Until they merge it to their repo. Maybe we should keep Issue #4 open until they do?
I took care of refactoring all references to the
scispacy.umls_utils.py. I checked it building umls dicts with the CLI and it all works fine.I also updated the dependencies in the .toml and .lock files
I made the function
xmen/umls.py:_expand_tuis()public because it is used in other scripts and was crashing the building of the medmentions dict.