1.1.1

1.1.1 - 2022-08-08

• Fixed alignment issues for the data with cell-independent features.
• Fixed alignment issues where the node is leaf and doesn't have any assigned cells or features.
• Fixed computing the depth of the anatomical structure.

1.1.0

1.1.0 - 2022-06-25

• Added a feature to generate CSV files from TSV/CSV files.
• Added typings and docstrings.
• Modified the code according to PEP-8 style guide.

1.0.0

This is a complete rewrite of the program. This version has none of the limitations from the proof of concept version, it includes data validation, and requires less user intervention.

Significant differences include:
1. The command line arguments have been greatly simplified.
2. The number of anatomical structure levels is automatically computed.
3. The input file has changed. Cells are now listed in a separate column from the children column.
4. Biomarkers and references can now be added to any anatomical structure.
5. The anytree Python module is required.
6. A header is autogenerate in the output file.
7. A DOT file can be optionally generated to display the tree in Graphviz.
8. Lots of tests to validate the input file.

Initial proof of concept release

This release is a proof of concept. It would benefit from more internal logic and data validation and would ideally require less user intervention.

This release has only been tested on a Mac running Python3.