Automated report

hubmapconsortium · May 29, 2024 · 121719e · 121719e
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diff --git a/NOTES.md b/NOTES.md
@@ -6,9 +6,9 @@ Release Notes
 
 |Ontology|Version|
 | :---: | :---: |
-|CL|2024-02-13|
 |PCL|2024-01-04|
-|UBERON|2024-03-22|
+|UBERON|2024-05-13|
+|CL|2024-05-15|
 
 ### ASCT+b Tables
 
@@ -26,12 +26,12 @@ Release Notes
 |Large_intestine|v1.4|revise for April 1, 2024|
 |Liver|v1.3|June 15, 2024|
 |Lung|v1.5|June 15, 2024|
-|Lymph_node|v1.4|revise for April 1, 2024|
+|Lymph_node|v1.4|June 15, 2024|
 |Lymph_vasculature|v1.5|June 15, 2024|
-|Main_Bronchus|v1.2|revise for April 1, 2024|
+|Main_Bronchus|v1.2|June 15, 2024|
 |Mammary_Gland|v1.0|revise for April 1, 2024|
-|Muscular_System|v1.2|April 29, 2024|
-|Ovary|v1.3|revise for April 1, 2023|
+|Muscular_System|v1.2|June 15, 2024|
+|Ovary|v1.3|June 15, 2024|
 |Pancreas|v1.4|revise for April 1, 2024|
 |Palatine_Tonsil|V1.1|June 15, 2024|
 |Peripheral_nervous_system|v1.2|June 15, 2024|

diff --git a/docs/Anatomical_Systems/README.md b/docs/Anatomical_Systems/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2024-05-24)
+ASCT+B Validation Reports for Anatomical_Systems (2024-05-29)
 =============================================================
 
 Table of contents

diff --git a/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf b/docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf
diff --git a/docs/Anatomical_Systems/graph.md b/docs/Anatomical_Systems/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Anatomical_Systems (2024-05-24)
+ASCT+B Validation Reports for Anatomical_Systems (2024-05-29)
 =============================================================
 
 # ASCT+B as Graph

diff --git a/docs/Blood/README.md b/docs/Blood/README.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2024-05-24)
+ASCT+B Validation Reports for Blood (2024-05-29)
 ================================================
 
 Table of contents
@@ -140,13 +140,13 @@ In the case of the CT-CT relationship, for each couple of terms, we verify for _
 
 |    | row_number                                                                                                               | s                                                       | slabel                                                | user_slabel                       | o                                                       | olabel                | user_olabel              |   deltaIC |
 |----|--------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------|-------------------------------------------------------|-----------------------------------|---------------------------------------------------------|-----------------------|--------------------------|-----------|
-|  0 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |    11.247 |
-|  5 | [16](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=16:16) | [CL:0002394](http://purl.obolibrary.org/obo/CL_0002394) | CD141-positive myeloid dendritic cell                 | dendritic cell type 1 (DC1)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |   nan     |
-|  7 | [17](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=17:17) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell                  | dendritic cell type 2 (DC2)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |   nan     |
-|  9 | [18](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=18:18) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell                  | dendritic cell type 3 (DC3)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |   nan     |
-| 15 | [23](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=23:23) | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil                                            | neutrophil                        | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil            | neutrophilic granulocyte |   nan     |
-| 28 | [35](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=35:35) | [CL:0000938](http://purl.obolibrary.org/obo/CL_0000938) | CD16-negative, CD56-bright natural killer cell, human | CD56 bright Natural killer        | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell      | NK lymphocytes           |   nan     |
-| 30 | [36](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=36:36) | [CL:0000824](http://purl.obolibrary.org/obo/CL_0000824) | mature natural killer cell                            | mature Natural killer             | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell      | NK lymphocytes           |   nan     |
+|  0 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell                  | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |   11.2426 |
+|  5 | [16](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=16:16) | [CL:0002394](http://purl.obolibrary.org/obo/CL_0002394) | CD141-positive myeloid dendritic cell                 | dendritic cell type 1 (DC1)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |  nan      |
+|  7 | [17](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=17:17) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell                  | dendritic cell type 2 (DC2)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |  nan      |
+|  9 | [18](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=18:18) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell                  | dendritic cell type 3 (DC3)       | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC)      |  nan      |
+| 15 | [23](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=23:23) | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil                                            | neutrophil                        | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil            | neutrophilic granulocyte |  nan      |
+| 28 | [35](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=35:35) | [CL:0000938](http://purl.obolibrary.org/obo/CL_0000938) | CD16-negative, CD56-bright natural killer cell, human | CD56 bright Natural killer        | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell      | NK lymphocytes           |  nan      |
+| 30 | [36](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=36:36) | [CL:0000824](http://purl.obolibrary.org/obo/CL_0000824) | mature natural killer cell                            | mature Natural killer             | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell      | NK lymphocytes           |  nan      |
 
 
 

diff --git a/docs/Blood/assets/ccf_Blood_graph.pdf b/docs/Blood/assets/ccf_Blood_graph.pdf
diff --git a/docs/Blood/class_Blood_log.tsv b/docs/Blood/class_Blood_log.tsv
@@ -1,5 +1,5 @@
 row_number	s	slabel	user_slabel	o	olabel	user_olabel	deltaIC
-20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	11.246976685583974
+20	CL:0000840	immature conventional dendritic cell	transitional Dendritic Cell (tDC)	CL:0001056	dendritic cell, human	dendritic cell (DC)	11.242573249526984
 12	CL:0000816	immature B cell	immature B cell	UBERON:0000178	Blood	Blood	
 13	CL:0000787	memory B cell	memory B cell	UBERON:0000178	Blood	Blood	
 14	CL:0000788	naive B cell	naive B cell	UBERON:0000178	Blood	Blood	

diff --git a/docs/Blood/graph.md b/docs/Blood/graph.md
@@ -1,5 +1,5 @@
 
-ASCT+B Validation Reports for Blood (2024-05-24)
+ASCT+B Validation Reports for Blood (2024-05-29)
 ================================================
 
 # ASCT+B as Graph