Automated report

NOTES.md

@@ -6,45 +6,44 @@ Release Notes
 
 |Ontology|Version|
 | :---: | :---: |
+|UBERON|2024-05-13|
 |CL|2024-05-15|
 |PCL|2024-01-04|
-|UBERON|2024-05-13|
 
 ### ASCT+b Tables
 
 |Organ|Version|Date|
 | :---: | :---: | :---: |
-|Anatomical_Systems|v1.1|June 15, 2024|
+|Anatomical_Systems|v1.0|December 15, 2023|
 |Blood|v1.4|June 15, 2024|
 |Bone-Marrow|v1.5|June 15, 2024|
 |Brain|v1.6|June 15, 2024|
-|Eye|v1.4|revise for October 1, 2024|
+|Eye|v1.2|June 15, 2023|
 |Fallopian_tube|v1.3|June 15, 2024|
 |Heart|v1.4|June 15, 2024|
 |Kidney|v1.5|June 15, 2024|
 |Knee|v1.3|June 15, 2024|
-|Large_intestine|v1.4|revise for April 1, 2024|
+|Large_intestine|v1.3|December 15, 2022|
 |Liver|v1.3|June 15, 2024|
 |Lung|v1.5|June 15, 2024|
 |Lymph_node|v1.4|June 15, 2024|
 |Lymph_vasculature|v1.5|June 15, 2024|
 |Main_Bronchus|v1.2|June 15, 2024|
-|Mammary_Gland|v1.0|revise for April 1, 2024|
 |Muscular_System|v1.2|June 15, 2024|
 |Ovary|v1.3|June 15, 2024|
-|Pancreas|v1.4|revise for April 1, 2024|
+|Pancreas|v1.3|December 15, 2023|
 |Palatine_Tonsil|V1.1|June 15, 2024|
 |Peripheral_nervous_system|v1.2|June 15, 2024|
 |Placenta|v1.2|June 15, 2024|
-|Prostate|v1.2|NA|
+|Prostate|v1.1|December 15, 2023|
 |Skeleton|v1.2|June 15, 2024|
-|Skin|v1.4|Revise for April 1, 2024|
-|Small_intestine|v1.2|revise for April 1, 2024|
-|Spinal_Cord|v1.0|revise for April 1, 2024|
-|Spleen|v1.4|revise for April 1, 2024|
-|Thymus|v1.5|revise for April 1, 2024|
-|Trachea|v1.1|revise for October 1|
-|Ureter|NA|revise for April 2023|
-|Urinary_bladder|v1.1|revise for April 2024|
-|Uterus|v1.2|revise for April 1, 2024|
+|Skin|v1.3|December 15, 2023|
+|Small_intestine|v1.1|December 15, 2022|
+|Spinal_Cord|v1.0|June 15, 2023|
+|Spleen|v1.3|December 15, 2022|
+|Thymus|v1.4|December 15, 2023|
+|Trachea|v1.0|June 15, 2023|
+|Ureter|v1.0|12/1/2021|
+|Urinary_bladder|v1.0|12/1/2021|
+|Uterus|v1.1|May 6, 2022|
 |Blood_vasculature|v1.6|June 15, 2024|

docs/Anatomical_Systems/README.md

@@ -52,7 +52,7 @@ If the term's name/label and the name/label given by SME are too different, plea
 
 If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.  
 
-- No issues found.
+1. The term _[UBERON:0014892](http://purl.obolibrary.org/obo/UBERON_0014892)_ has a different name/label in the source ontology in the following 1 row _[49](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=49:49)_. The name/label in the **ASCT+B table** is _skeletal muscle organ_ and the one in the **ontology** is _skeletal muscle organ, vertebrate_. For reference, the given name/label **by SMEs** is _skeletal muscle organ_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
 
 
 ## Blank ontology ID
@@ -124,16 +124,27 @@ This table contains terms for anatomical structures that are related to each oth
 
 
 
-|    | s                                                               | slabel             | user_slabel        | o                                                               | olabel                     | user_olabel                | row_number                                                                                                                |   deltaIC |
-|----|-----------------------------------------------------------------|--------------------|--------------------|-----------------------------------------------------------------|----------------------------|----------------------------|---------------------------------------------------------------------------------------------------------------------------|-----------|
-|  0 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system      | immune system      | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [24](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=24:24) |       nan |
-|  1 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system      | immune system      | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [25](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=25:25) |       nan |
-|  2 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system      | immune system      | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [26](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=26:26) |       nan |
-|  3 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system      | immune system      | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [27](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=27:27) |       nan |
-|  4 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system      | immune system      | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [28](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=28:28) |       nan |
-|  5 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system      | immune system      | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [29](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=29:29) |       nan |
-|  6 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [45](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=45:45) |       nan |
-|  7 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [46](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=46:46) |       nan |
+|    | s                                                               | slabel                   | user_slabel              | o                                                               | olabel                     | user_olabel                | row_number                                                                                                                |   deltaIC |
+|----|-----------------------------------------------------------------|--------------------------|--------------------------|-----------------------------------------------------------------|----------------------------|----------------------------|---------------------------------------------------------------------------------------------------------------------------|-----------|
+|  0 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system            | immune system            | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [24](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=24:24) |       nan |
+|  1 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system            | immune system            | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [25](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=25:25) |       nan |
+|  2 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system            | immune system            | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [26](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=26:26) |       nan |
+|  3 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system            | immune system            | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [27](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=27:27) |       nan |
+|  4 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system            | immune system            | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [28](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=28:28) |       nan |
+|  5 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system            | immune system            | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system          | anatomical system          | [29](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=29:29) |       nan |
+|  6 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia       | internal genitalia       | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [45](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=45:45) |       nan |
+|  7 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia       | internal genitalia       | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [46](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=46:46) |       nan |
+|  8 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [49](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=49:49) |       nan |
+|  9 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [50](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=50:50) |       nan |
+| 10 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [51](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=51:51) |       nan |
+| 11 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [52](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=52:52) |       nan |
+| 12 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [53](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=53:53) |       nan |
+| 13 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [54](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=54:54) |       nan |
+| 14 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [55](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=55:55) |       nan |
+| 15 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [56](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=56:56) |       nan |
+| 16 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [57](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=57:57) |       nan |
+| 17 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [58](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=58:58) |       nan |
+| 18 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision   | organ system subdivision   | [59](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=59:59) |       nan |
 
 
 

docs/Anatomical_Systems/class_Anatomical_Systems_log.tsv

@@ -7,3 +7,14 @@ UBERON:0002405	immune system	immune system	UBERON:0000467	anatomical system	anat
 UBERON:0002405	immune system	immune system	UBERON:0000467	anatomical system	anatomical system	29	
 UBERON:0004175	internal genitalia	internal genitalia	UBERON:0000474	female reproductive system	female reproductive system	45	
 UBERON:0004175	internal genitalia	internal genitalia	UBERON:0000474	female reproductive system	female reproductive system	46	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	49	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	50	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	51	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	52	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	53	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	54	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	55	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	56	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	57	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	58	
+UBERON:0011216	organ system subdivision	organ system subdivision	UBERON:0011216	organ system subdivision	organ system subdivision	59	

docs/Anatomical_Systems/logs_dict.json

@@ -1,6 +1,14 @@
 {
   "no_valid_id": [],
   "no_found_id": [],
-  "diff_label": [],
+  "diff_label": [
+    {
+      "id": "UBERON:0014892",
+      "label": "skeletal muscle organ, vertebrate",
+      "asct_label": "skeletal muscle organ",
+      "user_label": "skeletal muscle organ",
+      "row_number": 49
+    }
+  ],
   "no_parent": []
 }