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anitacaron committed Jul 4, 2024
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67 changes: 34 additions & 33 deletions NOTES.md
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|Ontology|Version|
| :---: | :---: |
|CL|2024-05-15|
|UBERON|2024-05-13|
|PCL|2024-01-04|
|CL|2024-05-15|

### ASCT+b Tables

|Organ|Version|Date|
| :---: | :---: | :---: |
|Anatomical_Systems|v1.0|December 15, 2023|
|Blood|v1.4|June 15, 2024|
|Bone-Marrow|v1.5|June 15, 2024|
|Brain|v1.6|June 15, 2024|
|Eye|v1.2|June 15, 2023|
|Fallopian_tube|v1.3|June 15, 2024|
|Heart|v1.4|June 15, 2024|
|Kidney|v1.5|June 15, 2024|
|Knee|v1.3|June 15, 2024|
|Large_intestine|v1.3|December 15, 2022|
|Liver|v1.3|June 15, 2024|
|Lung|v1.5|June 15, 2024|
|Lymph_node|v1.4|June 15, 2024|
|Lymph_vasculature|v1.5|June 15, 2024|
|Main_Bronchus|v1.2|June 15, 2024|
|Muscular_System|v1.2|June 15, 2024|
|Ovary|v1.3|June 15, 2024|
|Pancreas|v1.3|December 15, 2023|
|Anatomical_Systems|v1.1|June 15, 2024|
|Blood|v1.5|NA|
|Bone-Marrow|v1.6|NA|
|Brain|v1.7|NA|
|Eye|v1.4|revise for October 1, 2024|
|Fallopian_tube|v1.4|prepare for October 1, 2024|
|Heart|v1.5|NA|
|Kidney|v1.6|revise for October 1, 2024|
|Knee|v1.3|revise for October 1, 2024|
|Large_intestine|v1.4|revise for October 1, 2024|
|Liver|v1.4|NA|
|Lung|v1.6|revise for October 1, 2024|
|Lymph_node|v1.5|revise for October 1, 2024|
|Lymph_vasculature|v1.5|revise for October 1, 2024|
|Main_Bronchus|v1.3|NA|
|Mammary_Gland|v1.0|revise for April 1, 2024|
|Muscular_System|v1.3|revise for October 1, 2024|
|Ovary|v1.4|revise for October 1, 2024|
|Pancreas|v1.4|revise for October 1, 2024|
|Palatine_Tonsil|V1.1|June 15, 2024|
|Peripheral_nervous_system|v1.2|June 15, 2024|
|Placenta|v1.2|June 15, 2024|
|Prostate|v1.1|December 15, 2023|
|Skeleton|v1.2|June 15, 2024|
|Skin|v1.3|December 15, 2023|
|Small_intestine|v1.1|December 15, 2022|
|Spinal_Cord|v1.0|June 15, 2023|
|Spleen|v1.3|December 15, 2022|
|Thymus|v1.4|December 15, 2023|
|Trachea|v1.0|June 15, 2023|
|Ureter|v1.0|12/1/2021|
|Urinary_bladder|v1.0|12/1/2021|
|Uterus|v1.1|May 6, 2022|
|Blood_vasculature|v1.6|June 15, 2024|
|Peripheral_nervous_system|v1.3|NA|
|Placenta|v1.3|NA|
|Prostate|v1.2|revise for October 1, 2024|
|Skeleton|v1.3|revise for October 1, 2024|
|Skin|v1.4|Revise for October 1, 2024|
|Small_intestine|v1.2|revise for October 1, 2024|
|Spinal_Cord|v1.0|revise for April 1, 2024|
|Spleen|v1.4|revise for April 1, 2024|
|Thymus|v1.5|revise for April 1, 2024|
|Trachea|v1.1|revise for October 1|
|Ureter|NA|revise for April 2023|
|Urinary_bladder|v1.1|revise for April 2024|
|Uterus|v1.2|revise for April 1, 2024|
|Blood_vasculature|v1.7|NA|
35 changes: 12 additions & 23 deletions docs/Anatomical_Systems/README.md
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ASCT+B Validation Reports for Anatomical_Systems (2024-06-19)
ASCT+B Validation Reports for Anatomical_Systems (2024-07-04)
=============================================================

Table of contents
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If the name/label in the ontology contains *obsolete*, please look into OLS, clicking on the term ID, for its replacement.

1. The term _[UBERON:0014892](http://purl.obolibrary.org/obo/UBERON_0014892)_ has a different name/label in the source ontology in the following 1 row _[49](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=49:49)_. The name/label in the **ASCT+B table** is _skeletal muscle organ_ and the one in the **ontology** is _skeletal muscle organ, vertebrate_. For reference, the given name/label **by SMEs** is _skeletal muscle organ_. Please correct it in the columns AS/N/LABEL or CT/N/LABEL in the ASCT+B table.
- No issues found.


## Blank ontology ID
Expand Down Expand Up @@ -124,27 +124,16 @@ This table contains terms for anatomical structures that are related to each oth



| | s | slabel | user_slabel | o | olabel | user_olabel | row_number | deltaIC |
|----|-----------------------------------------------------------------|--------------------------|--------------------------|-----------------------------------------------------------------|----------------------------|----------------------------|---------------------------------------------------------------------------------------------------------------------------|-----------|
| 0 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [24](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=24:24) | nan |
| 1 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [25](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=25:25) | nan |
| 2 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [26](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=26:26) | nan |
| 3 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [27](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=27:27) | nan |
| 4 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [28](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=28:28) | nan |
| 5 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [29](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=29:29) | nan |
| 6 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [45](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=45:45) | nan |
| 7 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [46](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=46:46) | nan |
| 8 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [49](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=49:49) | nan |
| 9 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [50](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=50:50) | nan |
| 10 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [51](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=51:51) | nan |
| 11 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [52](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=52:52) | nan |
| 12 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [53](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=53:53) | nan |
| 13 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [54](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=54:54) | nan |
| 14 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [55](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=55:55) | nan |
| 15 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [56](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=56:56) | nan |
| 16 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [57](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=57:57) | nan |
| 17 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [58](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=58:58) | nan |
| 18 | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [UBERON:0011216](http://purl.obolibrary.org/obo/UBERON_0011216) | organ system subdivision | organ system subdivision | [59](https://docs.google.com/spreadsheets/d/1oB3m_IOMEcDsdQoDicXd9KXXz7oytIPIPiu9lq88quU/edit#gid=2028977062&range=59:59) | nan |
| | s | slabel | user_slabel | o | olabel | user_olabel | row_number | deltaIC |
|----|-----------------------------------------------------------------|--------------------|--------------------|-----------------------------------------------------------------|----------------------------|----------------------------|---------------------------------------------------------------------------------------------------------------------------|-----------|
| 0 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [24](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=24:24) | nan |
| 1 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [25](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=25:25) | nan |
| 2 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [26](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=26:26) | nan |
| 3 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [27](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=27:27) | nan |
| 4 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [28](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=28:28) | nan |
| 5 | [UBERON:0002405](http://purl.obolibrary.org/obo/UBERON_0002405) | immune system | immune system | [UBERON:0000467](http://purl.obolibrary.org/obo/UBERON_0000467) | anatomical system | anatomical system | [29](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=29:29) | nan |
| 6 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [45](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=45:45) | nan |
| 7 | [UBERON:0004175](http://purl.obolibrary.org/obo/UBERON_0004175) | internal genitalia | internal genitalia | [UBERON:0000474](http://purl.obolibrary.org/obo/UBERON_0000474) | female reproductive system | female reproductive system | [46](https://docs.google.com/spreadsheets/d/13qyyCHS4lxgIfVtQJ_aVxB-aWch7oJG-psrZn4ZoFEM/edit#gid=2028977062&range=46:46) | nan |



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11 changes: 0 additions & 11 deletions docs/Anatomical_Systems/class_Anatomical_Systems_log.tsv
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Expand Up @@ -7,14 +7,3 @@ UBERON:0002405 immune system immune system UBERON:0000467 anatomical system anat
UBERON:0002405 immune system immune system UBERON:0000467 anatomical system anatomical system 29
UBERON:0004175 internal genitalia internal genitalia UBERON:0000474 female reproductive system female reproductive system 45
UBERON:0004175 internal genitalia internal genitalia UBERON:0000474 female reproductive system female reproductive system 46
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 49
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 50
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 51
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 52
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 53
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 54
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 55
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 56
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 57
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 58
UBERON:0011216 organ system subdivision organ system subdivision UBERON:0011216 organ system subdivision organ system subdivision 59
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ASCT+B Validation Reports for Anatomical_Systems (2024-06-19)
ASCT+B Validation Reports for Anatomical_Systems (2024-07-04)
=============================================================

# ASCT+B as Graph
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{
"no_valid_id": [],
"no_found_id": [],
"diff_label": [
{
"id": "UBERON:0014892",
"label": "skeletal muscle organ, vertebrate",
"asct_label": "skeletal muscle organ",
"user_label": "skeletal muscle organ",
"row_number": 49
}
],
"diff_label": [],
"no_parent": []
}
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