Skip to content

Commit

Permalink
Fix typo in variable (#322)
Browse files Browse the repository at this point in the history
* work in chunks when verify if class exists and to construct suggestion graph

* fix variable name

* change test to use Anatomical Systems and Brain tables

---------

Co-authored-by: Anita Caron <[email protected]>
  • Loading branch information
Anita Caron and anitacaron authored May 1, 2024
1 parent 3948fff commit 455fbe9
Show file tree
Hide file tree
Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/build.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -26,4 +26,4 @@ jobs:
- name: verify and build
env:
DEFAULT_BRANCH: master
run: mkdir -p resources/ASCT-b_tables && cd src && make official_release JOBS=Kidney
run: mkdir -p resources/ASCT-b_tables && cd src && make official_release JOBS="Anatomical_Systems Brain"
2 changes: 1 addition & 1 deletion src/template_generation_tools.py
Original file line number Diff line number Diff line change
Expand Up @@ -98,7 +98,7 @@ def generate_class_graph_template(ccf_tools_df :pd.DataFrame, log_dict: dict):
for chunk in chunks(list(terms), 90):
no_valid_class = ug.query_uberon(" ".join(chunk), ug.select_class)
else:
no_valid_class = ug.query_uberon(" ".join(chunk), ug.select_class)
no_valid_class = ug.query_uberon(" ".join(terms), ug.select_class)

del_index = []
for t in no_valid_class:
Expand Down

0 comments on commit 455fbe9

Please sign in to comment.