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anitacaron committed Apr 10, 2024
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12 changes: 6 additions & 6 deletions NOTES.md
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|Ontology|Version|
| :---: | :---: |
|UBERON|2024-02-20|
|PCL|2024-01-04|
|CL|2024-02-13|
|PCL|2024-01-04|
|UBERON|2024-03-22|

### ASCT+b Tables

Expand All @@ -27,15 +27,15 @@ Release Notes
|Liver|v1.3|Revise for April 1, 2024|
|Lung|v1.5|NA|
|Lymph_node|v1.4|revise for April 1, 2024|
|Lymph_vasculature|v1.5|March 29, 2024|
|Lymph_vasculature|v1.5|June 15, 2024|
|Main_Bronchus|v1.2|revise for April 1, 2024|
|Mammary_Gland|v1.0|revise for April 1, 2024|
|Muscular_System|v1.2|revise for April 1, 2024|
|Ovary|v1.3|revise for April 1, 2023|
|Pancreas|v1.4|revise for April 1, 2024|
|Palatine_Tonsil|V1.1|revise for April 1, 2024|
|Peripheral_nervous_system|v1.2|revise for April 1, 2024|
|Placenta|1.2|3/5/24|
|Peripheral_nervous_system|v1.2|June 15, 2024|
|Placenta|v1.2|June 15, 2024|
|Prostate|v1.2|NA|
|Skeleton|v1.1|revise for April 1, 2024|
|Skin|v1.4|Revise for April 1, 2024|
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|Ureter|NA|revise for April 2023|
|Urinary_bladder|v1.1|revise for April 2024|
|Uterus|v1.2|revise for April 1, 2024|
|Blood_vasculature|v1.6|revise for April 1, 2024|
|Blood_vasculature|v1.6|June 15, 2024|
2 changes: 1 addition & 1 deletion docs/Anatomical_Systems/README.md
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ASCT+B Validation Reports for Anatomical_Systems (2024-04-03)
ASCT+B Validation Reports for Anatomical_Systems (2024-04-10)
=============================================================

Table of contents
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20 changes: 7 additions & 13 deletions docs/Anatomical_Systems/class_Anatomical_Systems_indirect_log.tsv
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s slabel user_slabel o olabel user_olabel row_number
UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 39
UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 38
UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 37
UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 36
UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 37
UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 38
UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 39
UBERON:0000992 ovary ovary UBERON:0000474 female reproductive system female reproductive system 44
UBERON:0001224 renal pelvis renal pelvis UBERON:0011143 kidney kidney 40
UBERON:0001383 muscle of leg muscle of leg UBERON:0003663 hindlimb muscle hindlimb muscle 53
UBERON:0001383 muscle of leg muscle of leg UBERON:0003663 hindlimb muscle hindlimb muscle 54
UBERON:0001383 muscle of leg muscle of leg UBERON:0003663 hindlimb muscle hindlimb muscle 55
UBERON:0001557 upper respiratory tract upper respiratory tract UBERON:0000065 respiratory tract respiratory tract 36
UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 38
UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 39
UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 37
UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 39
UBERON:0001558 lower respiratory tract lower respiratory tract UBERON:0000065 respiratory tract respiratory tract 38
UBERON:0001911 mammary gland mammary gland UBERON:0002416 integumental system integumental system 31
UBERON:0002048 lung lung UBERON:0000170 pair of lungs pair of lungs 37
UBERON:0002106 spleen spleen UBERON:0002390 hematopoietic system hematopoietic system 34
UBERON:0002106 spleen spleen UBERON:0002405 immune system immune system 25
UBERON:0002106 spleen spleen UBERON:0002390 hematopoietic system hematopoietic system 34
UBERON:0002107 liver liver UBERON:0001007 digestive system digestive system 18
UBERON:0002370 thymus thymus UBERON:0002405 immune system immune system 26
UBERON:0002370 thymus thymus UBERON:0002390 hematopoietic system hematopoietic system 35
UBERON:0002370 thymus thymus UBERON:0002405 immune system immune system 26
UBERON:0003889 fallopian tube fallopian tube UBERON:0003975 internal female genitalia internal female genitalia 45
UBERON:0004256 hindlimb zeugopod muscle hindlimb zeugopod muscle UBERON:0001383 muscle of leg muscle of leg 55
UBERON:0004256 hindlimb zeugopod muscle hindlimb zeugopod muscle UBERON:0001383 muscle of leg muscle of leg 54
UBERON:0004256 hindlimb zeugopod muscle hindlimb zeugopod muscle UBERON:0001383 muscle of leg muscle of leg 53
UBERON:0010147 male accessory sex gland male accessory sex gland UBERON:0000079 male reproductive system male reproductive system 48
UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 40
UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 41
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2 changes: 1 addition & 1 deletion docs/Anatomical_Systems/graph.md
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ASCT+B Validation Reports for Anatomical_Systems (2024-04-03)
ASCT+B Validation Reports for Anatomical_Systems (2024-04-10)
=============================================================

# ASCT+B as Graph
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16 changes: 8 additions & 8 deletions docs/Blood/README.md
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ASCT+B Validation Reports for Blood (2024-04-03)
ASCT+B Validation Reports for Blood (2024-04-10)
================================================

Table of contents
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| | row_number | s | slabel | user_slabel | o | olabel | user_olabel | deltaIC |
|----|--------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------|-------------------------------------------------------|-----------------------------------|---------------------------------------------------------|-----------------------|--------------------------|-----------|
| 0 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | 11.25 |
| 5 | [16](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=16:16) | [CL:0002394](http://purl.obolibrary.org/obo/CL_0002394) | CD141-positive myeloid dendritic cell | dendritic cell type 1 (DC1) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 7 | [17](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=17:17) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 2 (DC2) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 9 | [18](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=18:18) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 3 (DC3) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 15 | [23](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=23:23) | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil | neutrophil | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil | neutrophilic granulocyte | nan |
| 28 | [35](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=35:35) | [CL:0000938](http://purl.obolibrary.org/obo/CL_0000938) | CD16-negative, CD56-bright natural killer cell, human | CD56 bright Natural killer | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell | NK lymphocytes | nan |
| 30 | [36](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=36:36) | [CL:0000824](http://purl.obolibrary.org/obo/CL_0000824) | mature natural killer cell | mature Natural killer | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell | NK lymphocytes | nan |
| 0 | [20](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | 11.247 |
| 5 | [16](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=16:16) | [CL:0002394](http://purl.obolibrary.org/obo/CL_0002394) | CD141-positive myeloid dendritic cell | dendritic cell type 1 (DC1) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 7 | [17](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=17:17) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 2 (DC2) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 9 | [18](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=18:18) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 3 (DC3) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 15 | [23](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=23:23) | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil | neutrophil | [CL:0000775](http://purl.obolibrary.org/obo/CL_0000775) | neutrophil | neutrophilic granulocyte | nan |
| 28 | [35](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=35:35) | [CL:0000938](http://purl.obolibrary.org/obo/CL_0000938) | CD16-negative, CD56-bright natural killer cell, human | CD56 bright Natural killer | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell | NK lymphocytes | nan |
| 30 | [36](https://docs.google.com/spreadsheets/d/1bvIeKFyLP1wNh5TFQgt74zS2shd24Nfbm2CEFVtYCiQ/edit#gid=939446662&range=36:36) | [CL:0000824](http://purl.obolibrary.org/obo/CL_0000824) | mature natural killer cell | mature Natural killer | [CL:0000814](http://purl.obolibrary.org/obo/CL_0000814) | mature NK T cell | NK lymphocytes | nan |



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2 changes: 1 addition & 1 deletion docs/Blood/class_Blood_log.tsv
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row_number s slabel user_slabel o olabel user_olabel deltaIC
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC) 11.249999612971408
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC) 11.246976685583974
12 CL:0000816 immature B cell immature B cell UBERON:0000178 Blood Blood
13 CL:0000787 memory B cell memory B cell UBERON:0000178 Blood Blood
14 CL:0000788 naive B cell naive B cell UBERON:0000178 Blood Blood
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ASCT+B Validation Reports for Blood (2024-04-03)
ASCT+B Validation Reports for Blood (2024-04-10)
================================================

# ASCT+B as Graph
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