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Cell type, location and marker report #184

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Cell type, location and marker report #184

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6250d38
generate cell type, location and marker report
anitacaron Oct 7, 2022
f52f3e8
reports
anitacaron Oct 7, 2022
d0b8754
remove empty markers
anitacaron Oct 14, 2022
e041ba1
updated reports
anitacaron Oct 14, 2022
2bf64de
generate robot templates and remove blood vasculature table from merg…
anitacaron Oct 14, 2022
0bb32c9
generate dos-dp template
anitacaron Oct 30, 2022
beaaa1a
update reports
anitacaron Oct 31, 2022
8242867
Merge branch 'master' into anitacaron/issue183
anitacaron Jan 6, 2023
3746c03
update data for dosdp
anitacaron Jan 6, 2023
55fef9e
add reference
anitacaron Jan 11, 2023
08710f6
Merge branch 'master' into anitacaron/issue183
anitacaron Jan 31, 2023
b7c936b
update report location
anitacaron Jan 31, 2023
08cc9d9
Merge branch 'master' into anitacaron/issue183
anitacaron Aug 31, 2023
a2f9db0
update markers report generation
anitacaron Aug 31, 2023
376261e
update markers reports
anitacaron Aug 31, 2023
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27 changes: 27 additions & 0 deletions logs/ct_loc_markers/Blood_report.tsv
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Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References
UBERON:0000178 Blood Blood CL:0000767 basophil basophil HGNC:1604, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:7317
UBERON:0000178 Blood Blood CL:0000771 eosinophil eosinophil HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4015, HGNC:4171, HGNC:4855, HGNC:6017, HGNC:6017, HGNC:7317
UBERON:0000178 Blood Blood CL:0000775 neutrophil neutrophil HGNC:10489, HGNC:11249, HGNC:1645, HGNC:1820, HGNC:3619, HGNC:3623, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6149, HGNC:7176, HGNC:8498, HGNC:8904
UBERON:0000178 Blood Blood CL:0000787 memory B cell memory B cell HGNC:10720, HGNC:11922, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1643, HGNC:2336, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:5541, HGNC:6210, HGNC:7315, HGNC:7315 DOI:10.1002/jcla.20001
UBERON:0000178 Blood Blood CL:0000788 naive B cell naive B cell HGNC:11919, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.1038/s41467-019-12464-3
UBERON:0000178 Blood Blood CL:0000815 regulatory T cell T regulatory HGNC:11910, HGNC:11918, HGNC:12029, HGNC:12156, HGNC:1607, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2505, HGNC:26838, HGNC:30698, HGNC:6008, HGNC:6024, HGNC:6106, HGNC:6106, HGNC:636, HGNC:6711
UBERON:0000178 Blood Blood CL:0000816 immature B cell immature B cell HGNC:1633, HGNC:1633, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:7154, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.3389/fimmu.2012.00302
UBERON:0000178 Blood Blood CL:0000818 transitional stage B cell transitional B cell HGNC:1004, HGNC:11200, HGNC:11648, HGNC:11922, HGNC:1633, HGNC:1643, HGNC:1645, HGNC:1645, HGNC:1667, HGNC:1685, HGNC:18504, HGNC:2336, HGNC:38476, HGNC:5480, HGNC:7154, HGNC:7315 DOI:10.1073/pnas.172384399
UBERON:0000178 Blood Blood CL:0000824 mature natural killer cell mature Natural killer HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:3619, HGNC:4708, HGNC:4709, HGNC:6373, HGNC:7315, HGNC:7656, HGNC:921, HGNC:9360
UBERON:0000178 Blood Blood CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) HGNC:10875, HGNC:10875, HGNC:1628, HGNC:1633, HGNC:1643, HGNC:1674, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:905, HGNC:905 DOI:10.1182/blood-2004-02-0769
UBERON:0000178 Blood Blood CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive HGNC:11935, HGNC:12029, HGNC:12156, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:30698, HGNC:6024, HGNC:636, HGNC:6711, HGNC:9666
UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666
UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721
UBERON:0000178 Blood Blood CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666
UBERON:0000178 Blood Blood CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:6024, HGNC:636, HGNC:9666
UBERON:0000178 Blood Blood CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural killer HGNC:10645, HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:4711, HGNC:6373, HGNC:7315, HGNC:7656
UBERON:0000178 Blood Blood CL:0001050 effector CD8-positive, alpha-beta T cell CD8 T cell effector memory HGNC:10627, HGNC:10630, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4709, HGNC:9666
UBERON:0000178 Blood Blood CL:0001054 CD14-positive monocyte CD14 monocyte HGNC:10498, HGNC:10499, HGNC:10720, HGNC:1603, HGNC:1628, HGNC:1628, HGNC:1633, HGNC:1663, HGNC:1674, HGNC:2464, HGNC:2475, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:6152, HGNC:7656
UBERON:0000178 Blood Blood CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell (pDC) HGNC:13258, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:3619, HGNC:4709, HGNC:4947, HGNC:5713, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:8824 DOI:10.1111/bjh.14467
UBERON:0000178 Blood Blood CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA HGNC:10632, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4414, HGNC:5411, HGNC:6378, HGNC:7830, HGNC:9360, HGNC:9666
UBERON:0000178 Blood Blood CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721
UBERON:0000178 Blood Blood CL:0002394 CD141-positive myeloid dendritic cell dendritic cell type 1 (DC1) HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:26705, HGNC:3619, HGNC:4947, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167
UBERON:0000178 Blood Blood CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte HGNC:13378, HGNC:14189, HGNC:1628, HGNC:1633, HGNC:16642, HGNC:1674, HGNC:24149, HGNC:2558, HGNC:2561, HGNC:3619, HGNC:3619, HGNC:5414, HGNC:7656
UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 2 (DC2) HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019
UBERON:0000178 Blood Blood CL:0002399 CD1c-positive myeloid dendritic cell dendritic cell type 3 (DC3) HGNC:10498, HGNC:10499, HGNC:11784, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:4947, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724
UBERON:0000178 Blood Blood CL:0002437 mature CD8 single-positive thymocyte mature CD8 T cell HGNC:10632, HGNC:10720, HGNC:11922, HGNC:12276, HGNC:1608, HGNC:1667, HGNC:1674, HGNC:1678, HGNC:16830, HGNC:1706, HGNC:1706, HGNC:3068, HGNC:4710, HGNC:4711, HGNC:6380, HGNC:9666
47 changes: 47 additions & 0 deletions logs/ct_loc_markers/Bone-Marrow_report.tsv
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Terminal AS/ID Terminal AS/label Terminal AS/user_label Terminal CT/ID Terminal CT/label Terminal CT/user_label Markers References
UBERON:0002371 Bone marrow Bone marrow CL:0000037 hematopoietic stem cell hemopoietic stem cell HGNC:1036, HGNC:11801, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:2356, HGNC:3619, HGNC:4702, HGNC:4977, HGNC:4977, HGNC:7136, HGNC:7656, HGNC:7945, HGNC:894, HGNC:9454, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000049 common myeloid progenitor common myeloid progenitor HGNC:1628, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:24435, HGNC:3311, HGNC:3619, HGNC:3765, HGNC:4171, HGNC:5154, HGNC:6012, HGNC:7028, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889
UBERON:0002371 Bone marrow Bone marrow CL:0000050 megakaryocyte-erythroid progenitor cell megakaryocyte-erythroid-mast cell progenitor HGNC:11245, HGNC:15879, HGNC:1628, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:29109, HGNC:31397, HGNC:3619, HGNC:3765, HGNC:4170, HGNC:4171, HGNC:5992, HGNC:6012, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889
UBERON:0002371 Bone marrow Bone marrow CL:0000051 common lymphoid progenitor common lymphoid progenitor HGNC:12560, HGNC:12749, HGNC:1628, HGNC:16505, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:186, HGNC:3619, HGNC:6024, HGNC:7203, HGNC:7656, HGNC:9352
UBERON:0002371 Bone marrow Bone marrow CL:0000084 T cell T lymphocytes HGNC:10632, HGNC:12276, HGNC:1633, HGNC:1674, HGNC:16830, HGNC:1706, HGNC:3068, HGNC:3619, HGNC:4710, HGNC:4711, HGNC:6380, HGNC:7315, HGNC:7656
UBERON:0002371 Bone marrow Bone marrow CL:0000097 mast cell mast cell HGNC:12019, HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6017, HGNC:6017, HGNC:6024, HGNC:6342, HGNC:7317
UBERON:0002371 Bone marrow Bone marrow CL:0000553 megakaryocyte progenitor cell early Megakaryocyte HGNC:10690, HGNC:2067, HGNC:3609, HGNC:3618, HGNC:4171, HGNC:4439, HGNC:6138, HGNC:6156, HGNC:8861, HGNC:9070
UBERON:0002371 Bone marrow Bone marrow CL:0000556 megakaryocyte Megakaryocyte HGNC:10690, HGNC:18874, HGNC:24356, HGNC:3618, HGNC:4439, HGNC:4444, HGNC:6138, HGNC:6138, HGNC:6156, HGNC:8861, HGNC:8861, HGNC:9240
UBERON:0002371 Bone marrow Bone marrow CL:0000557 granulocyte monocyte progenitor cell granulocyte-macrophage progenitor cell HGNC:10576, HGNC:1455, HGNC:1628, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:3765, HGNC:6012, HGNC:7218, HGNC:7656, HGNC:913, HGNC:9666 DOI:10.1038/ni.1889
UBERON:0002371 Bone marrow Bone marrow CL:0000559 promonocyte promonocyte HGNC:10494, HGNC:10496, HGNC:1603, HGNC:1603, HGNC:1628, HGNC:1662, HGNC:1667, HGNC:2475, HGNC:2558, HGNC:28874, HGNC:31713, HGNC:3613, HGNC:6012, HGNC:6342, HGNC:7154
UBERON:0002371 Bone marrow Bone marrow CL:0000576 monocyte monocyte HGNC:11241, HGNC:1633, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:1834, HGNC:31713, HGNC:3613, HGNC:3765, HGNC:5358, HGNC:6012, HGNC:6348, HGNC:7154, HGNC:7656, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell early erythroid HGNC:11529, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:31397, HGNC:3349, HGNC:4170, HGNC:4702, HGNC:607, HGNC:6251, HGNC:6342, HGNC:6345, HGNC:7553, HGNC:9666 DOI:10.1371/journal.pone.0162209
UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell mid erythroid HGNC:10006, HGNC:10008, HGNC:11272, HGNC:11763, HGNC:1663, HGNC:1663, HGNC:21256, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:6345, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000764 erythroid lineage cell late erythroid HGNC:1093, HGNC:11763, HGNC:1663, HGNC:19911, HGNC:24040, HGNC:3349, HGNC:397, HGNC:4702, HGNC:4824, HGNC:4827, HGNC:4831, HGNC:6342, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000767 basophil basophil HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:6024, HGNC:7317
UBERON:0002371 Bone marrow Bone marrow CL:0000771 eosinophil eosinophil HGNC:1604, HGNC:17890, HGNC:2014, HGNC:2298, HGNC:3609, HGNC:4171, HGNC:4855, HGNC:6012, HGNC:6017, HGNC:6017, HGNC:7317
UBERON:0002371 Bone marrow Bone marrow CL:0000775 neutrophil neutrophil HGNC:10489, HGNC:11249, HGNC:1820, HGNC:2334, HGNC:3613, HGNC:3619, HGNC:3623, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6149, HGNC:7176, HGNC:8498, HGNC:8904, HGNC:9053
UBERON:0002371 Bone marrow Bone marrow CL:0000786 plasma cell plasma cell HGNC:10658, HGNC:10658, HGNC:11913, HGNC:11922, HGNC:14236, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:23400, HGNC:30125, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:5716 DOI:10.1073/pnas.172384399
UBERON:0002371 Bone marrow Bone marrow CL:0000787 memory B cell memory B cell HGNC:10720, HGNC:11922, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:5478, HGNC:5480, HGNC:5525, HGNC:6210, HGNC:7154, HGNC:7315, HGNC:7315 DOI:10.1002/jcla.20001
UBERON:0002371 Bone marrow Bone marrow CL:0000788 naive B cell naive B cell HGNC:10658, HGNC:11919, HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1645, HGNC:1667, HGNC:2336, HGNC:3612, HGNC:5480, HGNC:5541, HGNC:7315, HGNC:8619 DOI:10.1038/s41467-019-12464-3
UBERON:0002371 Bone marrow Bone marrow CL:0000815 regulatory T cell T regulatory HGNC:11910, HGNC:11918, HGNC:12029, HGNC:12156, HGNC:1607, HGNC:26838, HGNC:30698, HGNC:6024, HGNC:6106, HGNC:636, HGNC:6711
UBERON:0002371 Bone marrow Bone marrow CL:0000816 immature B cell immature B cell HGNC:11922, HGNC:1633, HGNC:1633, HGNC:1643, HGNC:2336, HGNC:5480, HGNC:5541, HGNC:5541, HGNC:7315, HGNC:7315, HGNC:8619 DOI:10.3389/fimmu.2012.00302
UBERON:0002371 Bone marrow Bone marrow CL:0000817 precursor B cell precursor B cell HGNC:1633, HGNC:1633, HGNC:1662, HGNC:5480, HGNC:5541, HGNC:6024, HGNC:7154, HGNC:8619 DOI:10.1016/j.exphem.2018.09.004
UBERON:0002371 Bone marrow Bone marrow CL:0000818 transitional stage B cell transitional B cell HGNC:1004, HGNC:11200, HGNC:11648, HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1645, HGNC:1674, HGNC:18504, HGNC:26705, HGNC:3619, HGNC:38476, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1073/pnas.172384399
UBERON:0002371 Bone marrow Bone marrow CL:0000824 mature natural killer cell mature Natural killer HGNC:12253, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2064, HGNC:2479, HGNC:2505, HGNC:3619, HGNC:4708, HGNC:4709, HGNC:6008, HGNC:6106, HGNC:6373, HGNC:9360
UBERON:0002371 Bone marrow Bone marrow CL:0000826 pro-B cell pro B progenitor HGNC:12709, HGNC:1633, HGNC:1662, HGNC:2983, HGNC:6024, HGNC:7154, HGNC:7154, HGNC:9831 DOI:10.1073/pnas.172384399
UBERON:0002371 Bone marrow Bone marrow CL:0000836 promyelocyte promyelocyte HGNC:11249, HGNC:1820, HGNC:2334, HGNC:2532, HGNC:3309, HGNC:3613, HGNC:3619, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:7218, HGNC:9053, HGNC:913, HGNC:9495
UBERON:0002371 Bone marrow Bone marrow CL:0000837 hematopoietic multipotent progenitor cell multipotent progenitor cell HGNC:11245, HGNC:11801, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:3765, HGNC:4702, HGNC:7656, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000840 immature conventional dendritic cell transitional Dendritic Cell HGNC:10875, HGNC:11763, HGNC:1643, HGNC:1663, HGNC:3349, HGNC:4702, HGNC:6342, HGNC:905, HGNC:9666 DOI:10.1182/blood-2004-02-0769
UBERON:0002371 Bone marrow Bone marrow CL:0000895 naive thymus-derived CD4-positive, alpha-beta T cell CD4 naive HGNC:11935, HGNC:12029, HGNC:12156, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:30698, HGNC:6024, HGNC:636, HGNC:6711, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4054, HGNC:537, HGNC:6563, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000897 CD4-positive, alpha-beta memory T cell CD4 T cell memory HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721
UBERON:0002371 Bone marrow Bone marrow CL:0000900 naive thymus-derived CD8-positive, alpha-beta T cell CD8 naive HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:6024, HGNC:636, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000909 CD8-positive, alpha-beta memory T cell CD8 T cell memory HGNC:1608, HGNC:16647, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:2360, HGNC:26974, HGNC:4709, HGNC:6134, HGNC:9360, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000913 effector memory CD8-positive, alpha-beta T cell CD8 T cell effector memory HGNC:10627, HGNC:10630, HGNC:12029, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4709, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0000936 early lymphoid progenitor lympho-myeloid progenitor cell HGNC:11200, HGNC:11491, HGNC:13221, HGNC:1628, HGNC:1633, HGNC:1639, HGNC:1662, HGNC:1662, HGNC:1667, HGNC:1674, HGNC:3619, HGNC:4702, HGNC:5713, HGNC:6010, HGNC:7656, HGNC:9666 DOI:10.1038/ni.1889
UBERON:0002371 Bone marrow Bone marrow CL:0000938 CD16-negative, CD56-bright natural killer cell, human CD56 bright Natural Killer HGNC:10645, HGNC:12253, HGNC:1633, HGNC:1674, HGNC:2064, HGNC:2479, HGNC:3619, HGNC:4711, HGNC:6373, HGNC:7315, HGNC:7656, HGNC:921
UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 2 HGNC:11784, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1636, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3618, HGNC:3619, HGNC:4940, HGNC:4943, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1016/j.immuni.2017.04.019
UBERON:0002371 Bone marrow Bone marrow CL:0000990 conventional dendritic cell dendritic cell type 1 HGNC:11784, HGNC:1625, HGNC:1628, HGNC:1633, HGNC:1636, HGNC:1674, HGNC:26705, HGNC:3619, HGNC:5951, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.3109/10428194.2013.781167
UBERON:0002371 Bone marrow Bone marrow CL:0001054 CD14-positive monocyte CD14 monocyte HGNC:10498, HGNC:10499, HGNC:1628, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:2464, HGNC:2475, HGNC:2558, HGNC:2561, HGNC:3619, HGNC:3623, HGNC:7656
UBERON:0002371 Bone marrow Bone marrow CL:0001056 dendritic cell, human dendritic cell type 3 HGNC:10498, HGNC:10499, HGNC:13258, HGNC:1628, HGNC:1631, HGNC:1633, HGNC:1636, HGNC:1663, HGNC:1674, HGNC:16916, HGNC:3609, HGNC:3619, HGNC:6012, HGNC:6152, HGNC:7656 DOI:10.1002/cyto.a.23724
UBERON:0002371 Bone marrow Bone marrow CL:0001058 plasmacytoid dendritic cell, human Plasmacytoid Dendritic Cell HGNC:10875, HGNC:1628, HGNC:1633, HGNC:1674, HGNC:3619, HGNC:4709, HGNC:5713, HGNC:6012, HGNC:6152, HGNC:7656, HGNC:8824, HGNC:905 DOI:10.1111/bjh.14467
UBERON:0002371 Bone marrow Bone marrow CL:0001062 effector memory CD8-positive, alpha-beta T cell, terminally differentiated CD8 T cell effector memory CD45RA HGNC:10632, HGNC:10720, HGNC:11922, HGNC:12029, HGNC:1608, HGNC:1667, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:24961, HGNC:4414, HGNC:5411, HGNC:6378, HGNC:7830, HGNC:9360, HGNC:9666
UBERON:0002371 Bone marrow Bone marrow CL:0001087 effector memory CD4-positive, alpha-beta T cell, terminally differentiated CD4 T cell effector memory CD45RA HGNC:11362, HGNC:11892, HGNC:12029, HGNC:12729, HGNC:1608, HGNC:1673, HGNC:1674, HGNC:1678, HGNC:1706, HGNC:19129, HGNC:19383, HGNC:6001, HGNC:6015, HGNC:6817, HGNC:7849, HGNC:8109, HGNC:9666, HGNC:9721
UBERON:0002371 Bone marrow Bone marrow CL:0002193 myelocyte myelocyte HGNC:11249, HGNC:1472, HGNC:1645, HGNC:1820, HGNC:1820, HGNC:3383, HGNC:4015, HGNC:500, HGNC:6140, HGNC:6149, HGNC:6526, HGNC:6720
UBERON:0002371 Bone marrow Bone marrow CL:0002396 CD14-low, CD16-positive monocyte CD16 monocyte HGNC:13378, HGNC:14189, HGNC:1628, HGNC:1662, HGNC:16642, HGNC:1667, HGNC:24149, HGNC:28874, HGNC:31713, HGNC:3613, HGNC:3619, HGNC:5414, HGNC:6012, HGNC:6342, HGNC:7154
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