Bump version: 0.03-dev -> 0.0.3

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.3-dev
+current_version = 0.0.3
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?(?:\+(?P<build>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?

docs/source/conf.py

@@ -21,7 +21,7 @@
 copyright = '2019-2020, Vinay Bharadhwaj, Daniel Domingo-Fernández and Charles Tapley Hoyt'
 author = 'Vinay Bharadhwaj, Daniel Domingo-Fernández and Charles Tapley Hoyt'
 
-release = '0.0.3-dev'
+release = '0.0.3'
 
 parsed_version = re.match(
     '(?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?(?:\+(?P<build>[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*))?',

pyproject.toml

@@ -0,0 +1,69 @@
+[project]
+name = "clep"
+version = "0.0.3"
+description = "A Hybrid Data and Knowledge Driven Framework for Generating Patient Representations"
+readme = "README.md"
+requires-python = ">=3.7"
+keywords = [
+    "Bioinformatics",
+    "Machine Learning",
+    "Prediction Models",
+    "Embeddings",
+]
+license = { file = "LICENSE" }
+authors = [
+    { name = "Vinay Bharadhwaj", email = "[email protected]" },
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Environment :: Console",
+    "Intended Audience :: Developers",
+    "Intended Audience :: Science/Research",
+    "License :: OSI Approved :: Apache Software License",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3.7",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3 :: Only",
+    "Topic :: Scientific/Engineering :: Bio-Informatics",
+]
+dependencies = [
+    "click",
+    "pandas",
+    "rpy2",
+    "statsmodels",
+    "scikit-learn",
+    "seaborn",
+    "gseapy",
+    "cffi",
+    "pycairo",
+    "networkx",
+    "xgboost",
+    "tqdm",
+    "scikit-optimize",
+    "pykeen",
+]
+
+[tool.setuptools.packages.find]
+where = ["src"]
+
+[project.optional-dependencies]
+docs = [
+    "sphinx",
+    "sphinx-rtd-theme",
+    "sphinx-click",
+    "sphinx-autodoc-typehints",
+]
+
+[project.scripts]
+"clep" = "clep.cli:main"
+
+[tool.doc8]
+max-line-length = 120
+
+[tool.coverage.run]
+branch = true
+source = "clep"
+
+[tool.coverage.report]
+exclude_lines = ["def __repr__", "def __str__"]