parflowio

This project is meant to replace the existing pfio code used by pftools. For now the project is a separate repo, but that will change.
If you just need to use the python package, you can install the latest version with pip from PyPi:

pip install parflowio

Dependencies

C++ Library

1. CMake 3.15 or newer
2. A C++11 capable compiler
3. (Optional) Doxygen, for documentation

Python Package

1. All C++ dependencies
2. Python 3, and Python 3 development files (generally the -dev or -develop package).
3. The following python packages: numpy*, pip, wheel
4. SWIG 3 or newer (SWIG 4+ if Python docs are desired)
5. (Recommended) conda or similar virtual environment.

* If you installed numpy using your system package manager (like apt or pacman) you may need to also install the development version of numpy.

macOS users should be able to install SWIG using homebrew with the command:

brew install swig

SWIG can also be installed with conda when creating the environment.

Building C++ Library

Clone the repository:

git clone [email protected]:hydroframe/parflowio.git
cd parflowio

Install the required dependencies. Generate build files, and build the main target:

cmake -S . -B build
cmake --build build

This will build a library file (libparflowio.a). To use this library you will also need the header files.

To build the docs (requires doxygen):

cmake --build build -t docs

The documentation can be found in docs/html/index.html

Testing C++ Library

To run the C++ tests:

cmake --build build -t test

Building Python Package

Clone the repository, if needed:

git clone [email protected]:hydroframe/parflowio.git
cd parflowio

If using conda, create a new environment:

conda create -n parflowio numpy pip wheel
conda activate parflowio

Install the required dependencies. If installing SWIG with conda, ensure the created environment is active and install as shown:

conda install swig

Build with the python package enabled:

cmake -S . -B build -DBUILD_PYTHON=ON
cmake --build build

Installing Python Package

Build the Python package, as detailed in in the previous section
Install the built package:

pip install build/python/parflowio/

The package can now be used from python:

>>> from parflowio.pyParflowio import PFData
>>> pfdata = PFData('tests/inputs/press.init.pfb')
>>> pfdata.loadHeader()
>>> pfdata.loadData()
>>> data = pfdata.copyDataArray()

Testing Python Package

After building the python package and installing it, cd into the python directory and run python test.py.