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16 Open 13 Closed
16 Open 13 Closed
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Issues list

Link to Ensembl archive from HTML output enhancement
#33 opened Jan 4, 2020 by iansealy
Pass correct alpha to DESeq2's results function bug
#32 opened Jan 4, 2020 by iansealy
Run DESeq2 separately to QC enhancement
#31 opened Jan 4, 2020 by iansealy
Log output of sessionInfo() and design(dds) after running DESeq2 enhancement
#30 opened Jan 4, 2020 by iansealy
Do clean up as job enhancement
#29 opened Jun 11, 2015 by iansealy
remove commas from distances with multiple transcripts
#28 opened Apr 9, 2015 by fourpartswater
Move log2 fold change column before counts in output enhancement
#20 opened Jul 1, 2014 by iansealy
Warn if downsampling to zero reads enhancement
#19 opened Jun 23, 2014 by iansealy
Check pipeline exits (and can recover) if tar fails bug
#17 opened Jun 7, 2014 by iansealy
Analyse experiments with more than two conditions enhancement
#16 opened Jun 3, 2014 by iansealy
Kill UNKWN jobs if running for significant time enhancement
#14 opened May 4, 2014 by iansealy
Automatically warn or deal with samples with zero counts for all regions enhancement
#12 opened Apr 29, 2014 by iansealy
1
Kill LSF jobs running longer than expected enhancement
#9 opened Feb 15, 2014 by iansealy
Use LSF job arrays for submission enhancement
#7 opened Feb 13, 2014 by iansealy
Add documentation summarising pipeline and software prerequisites enhancement
#5 opened Feb 11, 2014 by iansealy
Identify conditions by clustering enhancement
#3 opened Jan 23, 2014 by iansealy
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