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resolved PyTables deps
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abyssum committed Feb 18, 2022
1 parent 6dbf40c commit def7f66
Showing 1 changed file with 4 additions and 7 deletions.
11 changes: 4 additions & 7 deletions Docker/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -78,11 +78,6 @@ RUN cmake ../seqan -DSEQAN_BUILD_SYSTEM=APP:yara && \
ln -s /usr/local/bin/yara-build/bin/yara* /usr/local/bin/
WORKDIR /usr/local/bin/

# Install Razers3
# RUN wget --no-check-certificate http://packages.seqan.de/razers3/razers3-3.5.8-Linux-x86_64.tar.xz && \
# tar xf razers3-3.5.8-Linux-x86_64.tar.xz && rm -f razers3-3.5.8-Linux-x86_64.tar.xz && \
# ln -s /usr/local/bin/razers3-3.5.8-Linux-x86_64/bin/razers3 /usr/local/bin/razers3

# Install samtools
ADD https://github.com/samtools/samtools/releases/download/${samtools_version}/samtools-${samtools_version}.tar.bz2 /usr/local/bin/

Expand All @@ -93,13 +88,15 @@ RUN tar -xjf /usr/local/bin/samtools-${samtools_version}.tar.bz2 -C /usr/local/b
# Install required python modules
RUN python -m pip install --upgrade pip && \
python3 -m pip install --upgrade pip && \
python -m pip install 'NumPy' && \
python -m pip install 'NumPy==1.16.6' && \
python -m pip install 'numexpr==2.7.0' && \
python -m pip install 'six==1.16.0' && \
python -m pip install 'tables==3.5.2' && \
python -m pip install 'Pyomo' && \
python -m pip install 'Pandas' && \
python -m pip install 'Pysam' && \
python -m pip install 'Matplotlib' && \
python -m pip install 'Future' && \
python -m pip install 'tables' && \
python3 -m pip install 'keras==2.3' && \
python3 -m pip install 'setuptools==47.3.1' && \
python3 -m pip install 'Pandas' && \
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