1.1.2

• NeoFuse can now accept files containing known/recurrent fusions with the "-K" flag. Some cancer entities are often characterized by fusions between the same pair of genes. In order to boost sensitivity, a list of known fusions can be supplied using this parameter. Refer to Arriba documentation for more details.
• Arriba filters can be switched off with the "-f" flag. NeoFuse does not accept space-separated lists as arguments, use only comma-separated lists (in the form: "uninteresting_contigs,non_coding_neighbors,merge_adjacent", etc.). Refer to Arriba documentation for more details.
• Optimized BAM sorting for STAR output, "-l" flag will be removed in future versions.