AMR for ElementSubdomainModifier

[fdkong]

Refs #19519

[moosebuild]

Caution! This contains a submodule update

[moosebuild]

Job Documentation on f2de942 wanted to post the following:

View the site here

This comment will be updated on new commits.

[fdkong]

@roystgnr This PR is using the libmesh branch from libMesh/libmesh#3094

The issue can be reproduced as follows

cd test/tests/userobjects/element_subdomain_modifier

and then run

mpirun -n 2 ../../../moose_test-dbg -i adaptivity_moving_boundary_3d.i

You should see something like

element_subdomain_modifier % mpirun -n 2 ../../../moose_test-dbg  -i adaptivity_moving_boundary_3d.i

Framework Information:
MOOSE Version:           git commit 3d56e306be on 2022-04-05
LibMesh Version:         0a41e911a21dac8a3d93a1f8948aaaa8d5400483
PETSc Version:           3.16.5
SLEPc Version:           3.16.2
Current Time:            Wed Apr  6 17:16:22 2022
Executable Timestamp:    Wed Apr  6 17:15:03 2022

Parallelism:
  Num Processors:          2
  Num Threads:             1

Mesh: 
  Parallel Type:           distributed
  Mesh Dimension:          3
  Spatial Dimension:       3
  Nodes:                   
    Total:                 64
    Local:                 38
    Min/Max/Avg:           26/38/32
  Elems:                   
    Total:                 21
    Local:                 11
    Min/Max/Avg:           10/11/10
  Num Subdomains:          2
  Num Partitions:          2
  Partitioner:             parmetis

Auxiliary System:
  Num DOFs:                127
  Num Local DOFs:          71
  Variables:               "phi" { "pid" "indicator" "marker" } 
  Finite Element Types:    "LAGRANGE" "MONOMIAL" 
  Approximation Orders:    "FIRST" "CONSTANT" 

Execution Information:
  Executioner:             Transient
  TimeStepper:             ConstantDT
  Solver Mode:             Preconditioned JFNK


Time Step 0, time = 0
Warning:  This MeshOutput subclass only supports meshes which have been serialized!
Warning:  This MeshOutput subclass only supports meshes which have been serialized!

Time Step 1, time = 0.1, dt = 0.1
 Solve Skipped!

Time Step 2, time = 0.2, dt = 0.1
 Solve Skipped!

[
[1] ../src/mesh/mesh_tools.C, line 1620, compiled Apr  6 2022 at 17:08:35
0] ../src/mesh/mesh_tools.C, line 1620, compiled Apr  6 2022 at 17:08:35
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 0
application called MPI_Abort(MPI_COMM_WORLD, 1) - process 1

The problem size is pretty small.

[moosebuild]

Caution! This contains a submodule update

[moosebuild]

Job Precheck on f2de942 wanted to post the following:

The following file(s) are changed:

conda/libmesh/meta.yaml

The libmesh conda configuration has changed; ping @idaholab/moose-dev-ops

[moosebuild]

Job Coverage on f2de942 wanted to post the following:

Framework coverage

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	82.56%	82.54%	-0.02%	98.97%
Hits	74124	74162	+38	96
Misses	15653	15684	+31	1

Diff coverage report

Full coverage report

Modules coverage

Contact

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	89.01%	89.00%	-0.02%	-
Hits	2917	2912	-5	0
Misses	360	360	-	0

Diff coverage report

Full coverage report

Geochemistry

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	96.61%	96.61%	-0.01%	-
Hits	4821	4812	-9	0
Misses	169	169	-	0

Diff coverage report

Full coverage report

Peridynamics

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	79.11%	79.10%	-0.01%	-
Hits	3037	3036	-1	0
Misses	802	802	-	0

Diff coverage report

Full coverage report

Phase field

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	90.18%	90.18%	+0.00%	-
Hits	11984	11985	+1	0
Misses	1305	1305	-	0

Diff coverage report

Full coverage report

Porous flow

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	96.28%	96.28%	-0.00%	-
Hits	10533	10532	-1	0
Misses	407	407	-	0

Diff coverage report

Full coverage report

Ray tracing

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	94.96%	94.94%	-0.02%	-
Hits	4091	4089	-2	0
Misses	217	218	+1	0

Diff coverage report

Full coverage report

Richards

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	97.61%	97.61%	-0.00%	-
Hits	3346	3343	-3	0
Misses	82	82	-	0

Diff coverage report

Full coverage report

Stochastic tools

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	89.84%	89.86%	+0.02%	-
Hits	4432	4431	-1	0
Misses	501	500	-1	0

Diff coverage report

Full coverage report

Tensor mechanics

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	88.90%	88.88%	-0.02%	-
Hits	26171	26165	-6	0
Misses	3268	3274	+6	0

Diff coverage report

Full coverage report

Thermal hydraulics

	172a63	#20716 f2de94
	Total	Total	+/-	New
Rate	90.84%	90.84%	-0.00%	-
Hits	11593	11591	-2	0
Misses	1169	1169	-	0

Diff coverage report

Full coverage report

Full coverage reports

Reports

• framework
• chemical_reactions
• combined
• contact
• external_petsc_solver
• fluid_properties
• fsi
• functional_expansion_tools
• geochemistry
• heat_conduction
• level_set
• misc
• navier_stokes
• peridynamics
• phase_field
• porous_flow
• ray_tracing
• rdg
• reactor
• richards
• stochastic_tools
• tensor_mechanics
• thermal_hydraulics
• xfem

This comment will be updated on new commits.

[github-actions]

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