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We noticed a set of our processed samples was failing to load the reference FASTA with the following error:
I looked into this saw that the fasta had a single contig named chr:1155232524-155232525. I was able to deterministically toggle the error by removing/re-adding the : in the contig name.
We're using Quilt with IGV. It appears to be using version 2.5.11.
We noticed a set of our processed samples was failing to load the reference FASTA with the following error:
I looked into this saw that the fasta had a single contig named
chr:1155232524-155232525
. I was able to deterministically toggle the error by removing/re-adding the:
in the contig name.Examples that worked:
chr
chr1155232524-155232525
chr1 AC:CM000663.2 gi:568336023 LN:248956422 rl:Chromosome M5:6aef897c3d6ff0c78aff06ac189178dd AS:GRCh38
foo
Examples that failed:
chr:1155232524-155232525
chr:1-1000
chr1:1-1000 AC:CM000663.2 gi:568336023 LN:248956422 rl:Chromosome M5:6aef897c3d6ff0c78aff06ac189178dd AS:GRCh38
foo:something
Is this a known and/or expected issue?
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