Fix issues with == in tests and update to work with numpy 1.25 (#917)
#7144
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| name: CI | |
| on: | |
| pull_request: | |
| push: | |
| branches: main | |
| schedule: | |
| - cron: '5 0 * * *' | |
| jobs: | |
| flake8: | |
| name: Flake8 | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - | |
| uses: actions/setup-python@v4 | |
| with: | |
| # matches compat target in setup.py | |
| python-version: '3.8' | |
| - name: Flake8 test | |
| run: | | |
| python3 -m venv myenv | |
| source myenv/bin/activate | |
| python -m pip install wheel | |
| python -m pip install flake8 pep8-naming flake8-quotes flake8-bugbear | |
| python -m flake8 --show-source --statistics "$(basename $GITHUB_REPOSITORY)" test examples setup.py doc/conf.py bin/ && echo "Flake8 found no errors." | |
| mypy: | |
| name: Mypy | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install | |
| run: | | |
| . .ci-support/install.sh | |
| - name: Run mypy | |
| run: | | |
| MINIFORGE_INSTALL_DIR=.miniforge3 | |
| . "$MINIFORGE_INSTALL_DIR/bin/activate" testing | |
| python -m pip install types-psutil types-PyYAML | |
| ./run-mypy.sh | |
| pylint: | |
| name: Pylint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install | |
| run: | | |
| . .ci-support/install.sh | |
| - name: Run Pylint | |
| run: | | |
| MINIFORGE_INSTALL_DIR=.miniforge3 | |
| . "$MINIFORGE_INSTALL_DIR/bin/activate" testing | |
| ./run-pylint.sh | |
| pydocstyle: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Run Pydocstyle | |
| run: | | |
| python3 -m venv myenv | |
| source myenv/bin/activate | |
| python -m pip install wheel | |
| python -m pip install pydocstyle | |
| python -m pydocstyle "$(basename $GITHUB_REPOSITORY)" && echo "pydocstyle found no errors." | |
| pytest: | |
| name: Pytest | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install | |
| run: | | |
| . .ci-support/install.sh | |
| - name: Run tests | |
| run: | | |
| MINIFORGE_INSTALL_DIR=.miniforge3 | |
| . "$MINIFORGE_INSTALL_DIR/bin/activate" testing | |
| cd test | |
| python -m pip install pytest | |
| python -m pytest --cov=mirgecom --durations=0 --tb=native --junitxml=pytest.xml --doctest-modules -rxsw . ../doc/*.rst ../doc/*/*.rst | |
| examples: | |
| name: Examples | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, porter] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install | |
| run: | | |
| . .ci-support/install.sh | |
| - name: Test lazy accuracy | |
| run: | | |
| MINIFORGE_INSTALL_DIR=.miniforge3 | |
| . "$MINIFORGE_INSTALL_DIR/bin/activate" testing | |
| conda install vtk # needed for the accuracy comparison | |
| export XDG_CACHE_HOME=/tmp | |
| [[ $(hostname) == "porter" ]] && export PYOPENCL_TEST="port:nv" && unset XDG_CACHE_HOME && conda install pocl-cuda | |
| # && export POCL_DEBUG=cuda | |
| scripts/run-integrated-tests.sh --lazy-accuracy | |
| - name: Run examples | |
| run: | | |
| MINIFORGE_INSTALL_DIR=.miniforge3 | |
| . "$MINIFORGE_INSTALL_DIR/bin/activate" testing | |
| export XDG_CACHE_HOME=/tmp | |
| [[ $(hostname) == "porter" ]] && export PYOPENCL_TEST="port:nv" && unset XDG_CACHE_HOME && conda install pocl-cuda | |
| # && export POCL_DEBUG=cuda | |
| scripts/run-integrated-tests.sh --examples | |
| doc: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install | |
| run: | | |
| . .ci-support/install.sh | |
| - name: Build docs | |
| run: | | |
| MINIFORGE_INSTALL_DIR=.miniforge3 | |
| . "$MINIFORGE_INSTALL_DIR/bin/activate" testing | |
| sudo apt-get update | |
| sudo apt-get install texlive-latex-extra latexmk | |
| conda install sphinx graphviz 'docutils>=0.16' | |
| pip install sphinx-math-dollar sphinx-copybutton furo | |
| cd doc | |
| make html SPHINXOPTS="-W --keep-going -n" | |
| make latexpdf SPHINXOPTS="-W --keep-going -n" | |
| emirge: | |
| name: Emirge installation | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install emirge | |
| run: | | |
| [[ $(uname) == Linux ]] && sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev | |
| [[ $(uname) == Darwin ]] && brew upgrade && brew install mpich | |
| cd .. | |
| git clone https://github.com/illinois-ceesd/emirge | |
| cd emirge | |
| cp -a ../mirgecom . | |
| ./install.sh --skip-clone | |
| - name: Run simple mirgecom test | |
| run: | | |
| cd .. | |
| source emirge/config/activate_env.sh | |
| cd mirgecom/examples | |
| python -m mpi4py ./pulse-mpi.py | |
| y1: | |
| name: Production testing | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, porter] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: '0' | |
| - name: Prepare production environment | |
| run: | | |
| [[ $(uname) == Linux ]] && [[ $(hostname) != "porter" ]] && sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev | |
| [[ $(uname) == Darwin ]] && brew upgrade && brew install mpich | |
| MIRGEDIR=$(pwd) | |
| cat scripts/production-testing-env.sh | |
| . scripts/production-testing-env.sh | |
| cd .. | |
| date | |
| printf "Removing stale install ..." | |
| rm -rf emirge.prod emirge.y1 | |
| printf "done.\n" | |
| date | |
| git clone https://github.com/illinois-ceesd/emirge emirge.prod | |
| cd emirge.prod | |
| . ../mirgecom/scripts/install-mirge-from-source.sh ${MIRGEDIR}/.. | |
| - name: Run production test | |
| run: | | |
| source ../config/activate_env.sh | |
| scripts/run-integrated-tests.sh --production |