Update bioimageio-packager.imjoy.html

imjoy-team · Sep 28, 2024 · 1f560f0 · 1f560f0
1 parent 4669a7c
commit 1f560f0
Showing 1 changed file with 41 additions and 2 deletions.
diff --git a/src/bioimageio-packager.imjoy.html b/src/bioimageio-packager.imjoy.html
@@ -4,7 +4,7 @@
   "type": "window",
   "tags": [],
   "ui": "",
-  "version": "0.3.3",
+  "version": "0.3.4",
   "api_version": "0.1.7",
   "description": "Exporting BioImage.IO model packages from the model description file",
   "icon": "https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/asset/download-icon.png",
@@ -189,6 +189,45 @@
         }
       }
   }
+
+ // for 0.5.3, test_inputs and test_outputs and sample_inputs and sample_outputs has been moved to inputs and outputs
+  for(let input of spec.inputs){
+      if(input.test_tensor){
+          if(await fileExists(rootUrl, input.test_tensor.source)){
+              files.push(input.test_tensor.source)
+          }
+          else{
+              showWarning("File not found: " + input.test_tensor.source)
+          }
+      }
+      if(input.sample_tensor){
+          if(await fileExists(rootUrl, input.sample_tensor.source)){
+              files.push(input.sample_tensor.source)
+          }
+          else{
+              showWarning("File not found: " + input.sample_tensor.source)
+          }
+      }
+  }
+
+  for(let output of spec.outputs){
+      if(output.test_tensor){
+          if(await fileExists(rootUrl, output.test_tensor.source)){
+              files.push(output.test_tensor.source)
+          }
+          else{
+              showWarning("File not found: " + output.test_tensor.source)
+          }
+      }
+      if(output.sample_tensor){
+          if(await fileExists(rootUrl, output.sample_tensor.source)){
+              files.push(output.sample_tensor.source)
+          }
+          else{
+              showWarning("File not found: " + output.sample_tensor.source)
+          }
+      }
+  }
 
   if(spec.covers && Array.isArray(spec.covers)){
     files = files.concat(spec.covers)
@@ -313,7 +352,7 @@
 
   async run(ctx) {
     if(!ctx.data || !ctx.data.source){
-      const specUrl = await api.prompt("Please paste the model spec url here", "https://bioimage-io.github.io/collection-bioimage-io/rdfs/10.5281/zenodo.5749843/5888237/rdf.yaml")
+      const specUrl = await api.prompt("Please paste the model spec url here", "https://uk1s3.embassy.ebi.ac.uk/public-datasets/bioimage.io/affable-shark/1.1/files/rdf.yaml")
       if(!specUrl) return
       app.modelInfo = {
         name: getFileName(specUrl),