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Implement support for different genetic codes #12

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scapella opened this issue Aug 28, 2014 · 1 comment
Open

Implement support for different genetic codes #12

scapella opened this issue Aug 28, 2014 · 1 comment
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@scapella
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Different genetic codes: Universal, mammalian mt, yeast mt, mold mt, invertebrate mt, cilate nuclear, echinoderm mt, euplotid mt, alternative yeast nuclear, ascidian mt.

When it comes to labeling stop codons, you need just a nuclear and mitochondrial code parameter.

@scapella scapella added this to the 2.0 milestone Apr 5, 2015
@scapella scapella self-assigned this Apr 5, 2015
@julienrichardalbert
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Hello,
Has this been implemented? I am a new user and may have missed this option. Specifically I am trying to use a ciliate nuclear genetic code, where stop codons are exclusively TGA. Checking the docs I could only find the "codon table" dictionary in the selective_trimming_for_dNdS_analyses.based_neighbours.py script. Would editing that be sufficient to process different genetic codes?
Thank you

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