-
Notifications
You must be signed in to change notification settings - Fork 30
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
cmaumet
committed
Mar 26, 2015
1 parent
f9e8276
commit 76b0a52
Showing
3 changed files
with
83 additions
and
0 deletions.
There are no files selected for viewing
9 changes: 9 additions & 0 deletions
9
nidm/nidm-results/extensions/non_parametric/spm/example001/README.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,9 @@ | ||
|
|
||
| Prov store: https://provenance.ecs.soton.ac.uk/store/documents/76838/ | ||
|
|
||
| Alternative serialisations: [json](https://provenance.ecs.soton.ac.uk/store/documents/76838.json), [turtle](https://provenance.ecs.soton.ac.uk/store/documents/76838.ttl), | ||
| Graph: [svg](https://provenance.ecs.soton.ac.uk/store/documents/76838.svg), [PDF](https://provenance.ecs.soton.ac.uk/store/documents/76838.pdf), [png](https://provenance.ecs.soton.ac.uk/store/documents/76838.png) | ||
|
|
||
|  | ||
|
|
||
24 changes: 24 additions & 0 deletions
24
nidm/nidm-results/extensions/non_parametric/spm/example001/spm_nonparametric.provn
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| document | ||
| prefix crypto <http://id.loc.gov/vocabulary/preservation/cryptographicHashFunctions#> | ||
| prefix neurolex <http://neurolex.org/wiki/> | ||
| prefix obo <http://purl.obolibrary.org/obo/> | ||
| prefix dct <http://purl.org/dc/terms/> | ||
| prefix spm <http://www.incf.org/ns/nidash/spm#> | ||
| prefix pre_0 <http://www.w3.org/1999/02/22-rdf-syntax-ns#> | ||
| prefix fsl <http://www.incf.org/ns/nidash/fsl#> | ||
| prefix rdfs <http://www.w3.org/2000/01/rdf-schema#> | ||
| prefix nfo <http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#> | ||
| prefix nidm <http://www.incf.org/ns/nidash/nidm#> | ||
| prefix niiri <http://iri.nidash.org/> | ||
| prefix xsd <http://www.w3.org/2001/XMLSchema> | ||
| prefix bnode <http://openprovenance.org/provtoolbox/bnode/> | ||
| prefix dctype <http://purl.org/dc/dcmitype/> | ||
| prefix dc <http://purl.org/dc/elements/1.1/> | ||
| activity(niiri:inference_id_1,-,-,[prov:type = 'nidm:Inference', prov:label = "Inference", nidm:isParametricTest = "false" %% xsd:boolean, nidm:hasAlternativeHypothesis = 'nidm:OneTailedTest']) | ||
| entity(niiri:non_parametric_null_dististribution_id,[prov:type = 'nidm:NonParametricNullDistribution', prov:label = "Non-Parametric Null Distribution", nidm:numberOfPermutations = "5000" %% xsd:int, nidm:exchangeabilityBlockSize = "4" %% xsd:int]) | ||
| entity(niiri:statistic_map_id,[prov:type = 'nidm:StatisticMap', prov:label = "Smoothed Variance T-Statistic Map: passive listening > rest", prov:location = "file://./SmoothedVarianceTStatistic.nii.gz" %% xsd:anyURI, nidm:statisticType = 'nidm:SmoothedVarianceTStatistic', nfo:fileName = "SmoothedVarianceTStatistic.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, nidm:contrastName = "passive listening > rest" %% xsd:string, nidm:effectDegreesOfFreedom = "1" %% xsd:float, nidm:inCoordinateSpace = 'niiri:coordinate_space_id_1', crypto:sha512 = "799e9bbf8c15b35c0098bca4" %% xsd:string, nidm:varianceSmoothingFWHM = "[6 6 6]" %% xsd:string]) | ||
| entity(niiri:coordinate_space_id_1,[prov:type = 'nidm:CoordinateSpace', prov:label = "Coordinate space 1", nidm:voxelToWorldMapping = "[[-3, 0, 0, 78],[0, 3, 0, -112],[0, 0, 3, -70],[0, 0, 0, 1]]" %% xsd:string, nidm:voxelUnits = "['mm', 'mm', 'mm']" %% xsd:string, nidm:voxelSize = "[3, 3, 3]" %% xsd:string, nidm:inWorldCoordinateSystem = 'nidm:MNICoordinateSystem', nidm:numberOfDimensions = "3" %% xsd:int, nidm:dimensionsInVoxels = "[53,63,52]" %% xsd:string]) | ||
| used(niiri:inference_id_1,niiri:non_parametric_null_dististribution_id,-) | ||
| used(niiri:inference_id_1,niiri:statistic_map_id,-) | ||
| wasGeneratedBy(niiri:statistic_map_id,niiri:contrast_estimation_id,-) | ||
| endDocument |
50 changes: 50 additions & 0 deletions
50
nidm/nidm-results/extensions/non_parametric/spm/example001/spm_nonparametric.ttl
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,50 @@ | ||
| @prefix prov: <http://www.w3.org/ns/prov#> . | ||
| @prefix crypto: <http://id.loc.gov/vocabulary/preservation/cryptographicHashFunctions#> . | ||
| @prefix neurolex: <http://neurolex.org/wiki/> . | ||
| @prefix dc: <http://purl.org/dc/elements/1.1/> . | ||
| @prefix dct: <http://purl.org/dc/terms/> . | ||
| @prefix dctype: <http://purl.org/dc/dcmitype/> . | ||
| @prefix spm: <http://www.incf.org/ns/nidash/spm#> . | ||
| @prefix fsl: <http://www.incf.org/ns/nidash/fsl#> . | ||
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | ||
| @prefix nidm: <http://www.incf.org/ns/nidash/nidm#> . | ||
| @prefix niiri: <http://iri.nidash.org/> . | ||
| @prefix nfo: <http://www.semanticdesktop.org/ontologies/2007/03/22/nfo#> . | ||
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | ||
| @prefix obo: <http://purl.obolibrary.org/obo/> . | ||
|
|
||
|
|
||
|
|
||
| niiri:coordinate_space_id_1 a prov:Entity , nidm:CoordinateSpace ; | ||
| rdfs:label "Coordinate space 1" ; | ||
| nidm:voxelToWorldMapping "[[-3, 0, 0, 78],[0, 3, 0, -112],[0, 0, 3, -70],[0, 0, 0, 1]]"^^xsd:string ; | ||
| nidm:voxelUnits "['mm', 'mm', 'mm']"^^xsd:string ; | ||
| nidm:voxelSize "[3, 3, 3]"^^xsd:string ; | ||
| nidm:inWorldCoordinateSystem nidm:MNICoordinateSystem ; | ||
| nidm:numberOfDimensions "3"^^xsd:int ; | ||
| nidm:dimensionsInVoxels "[53,63,52]"^^xsd:string . | ||
|
|
||
| niiri:inference_id_1 a prov:Activity , nidm:Inference ; | ||
| rdfs:label "Inference" ; | ||
| nidm:isParametricTest "false"^^xsd:boolean ; | ||
| nidm:hasAlternativeHypothesis nidm:OneTailedTest ; | ||
| prov:used niiri:non_parametric_null_dististribution_id, niiri:statistic_map_id . | ||
|
|
||
| niiri:non_parametric_null_dististribution_id a prov:Entity , nidm:NonParametricNullDistribution; | ||
| rdfs:label "Non-Parametric Null Distribution" ; | ||
| nidm:numberOfPermutations "5000"^^xsd:int ; | ||
| nidm:exchangeabilityBlockSize "4"^^xsd:int . | ||
|
|
||
| niiri:statistic_map_id a prov:Entity , nidm:StatisticMap ; | ||
| rdfs:label "Smoothed Variance T-Statistic Map: passive listening > rest" ; | ||
| prov:atLocation "file://./SmoothedVarianceTStatistic.nii.gz"^^xsd:anyURI ; | ||
| nidm:statisticType nidm:SmoothedVarianceTStatistic ; # | ||
| nfo:fileName "SmoothedVarianceTStatistic.nii.gz"^^xsd:string ; | ||
| dct:format "image/nifti"^^xsd:string ; | ||
| nidm:contrastName "passive listening > rest"^^xsd:string ; | ||
| nidm:effectDegreesOfFreedom "1"^^xsd:float ; | ||
| nidm:inCoordinateSpace niiri:coordinate_space_id_1 ; | ||
| crypto:sha512 "799e9bbf8c15b35c0098bca4"^^xsd:string ; | ||
| prov:wasGeneratedBy niiri:contrast_estimation_id; | ||
| nidm:varianceSmoothingFWHM "[6 6 6]"^^xsd:string . | ||
|
|