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30 Open 4 Closed
30 Open 4 Closed
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Issues list

Adjust ElasticSearch indices to include fields from new data model St. Justine St. Justine task
#39 opened Feb 2, 2023 by jthib077 Portal feature updates
@jthib077
Completion of accumulated issues in LinkML repo Sage Sage Bionetworks task TISLab TISLab task
#34 opened Jan 18, 2023 by lopierra Data modeling & requirements
Automate data model deployment flow Sage Sage Bionetworks task TISLab TISLab task
#33 opened Jan 18, 2023 by lopierra Data modeling & requirements
LinkML model to support both the DCA and raw usage in CAVATICA Sage Sage Bionetworks task TISLab TISLab task
#32 opened Jan 18, 2023 by lopierra
4 tasks
Data modeling & requirements
CHOP - process the new data types for the May release to meet the requirement for processed genomic data CHOP CHOP task Sage Sage Bionetworks task
#30 opened Jan 11, 2023 by ByroneCole-SageBionetworks
2 tasks
Data with existing harmonization pipelines on CAVATICA
Automate scheduling, triggering and monitoring of workflows on CAVATICA Sage Sage Bionetworks task
#29 opened Jan 11, 2023 by ByroneCole-SageBionetworks
2 of 10 tasks
Data with existing harmonization pipelines on CAVATICA
@thomasyu888
5
Determine data types to be processed Sage Sage Bionetworks task
#28 opened Jan 11, 2023 by ByroneCole-SageBionetworks
3 tasks
Metadata and triaging of any additional work needed for data without existing pipelines
@thomasyu888
15
Ability to take in RAS passports, do AuthZ checking and generated signed URLs via DRS for controlled access data distribution SevenBridges SevenBridges task
#27 opened Jan 11, 2023 by ByroneCole-SageBionetworks CAVATICA RAS Clearinghouse and DRS service for NHLBI hosted data
@mattions @suryasaha
1
Updated data from existing cohorts: VUMC Vanderbilt University task
#26 opened Jan 11, 2023 by ByroneCole-SageBionetworks
4 tasks
Data loading into FHIR service
@RobertJCarroll
1
NEW data: VUMC Vanderbilt University task
#25 opened Jan 11, 2023 by ByroneCole-SageBionetworks
2 tasks
Data loading into FHIR service
@RobertJCarroll
1
Load new harmonized/curated data from released Synapse table into INCLUDE Production FHIR service VUMC Vanderbilt University task
#24 opened Jan 11, 2023 by ByroneCole-SageBionetworks Data loading into FHIR service
@RobertJCarroll
1
REST API? St. Justine St. Justine task TISLab TISLab task
#23 opened Jan 11, 2023 by ByroneCole-SageBionetworks Portal feature updates
@mellybelly
1
Implement Germline Variant Exploration tool that will enable users to navigate across millions of annotated germline variants from INCLUDE participants with known co-occurring conditions St. Justine St. Justine task
#22 opened Jan 11, 2023 by ByroneCole-SageBionetworks
2 tasks
Portal feature updates
@jthib077
Implement Participant, study, file, variant entity page to provide additional entity-specific information St. Justine St. Justine task
#21 opened Jan 11, 2023 by ByroneCole-SageBionetworks Portal feature updates
@jthib077
1
ETL the new datasets from the INCLUDE FHIR server St. Justine St. Justine task
#20 opened Jan 11, 2023 by ByroneCole-SageBionetworks Portal feature updates
@jthib077
1
Ability to programmatically connect to FHIR endpoints using OAuth backed by keycloak for authorized registered tier users CHOP CHOP task
#19 opened Jan 11, 2023 by ByroneCole-SageBionetworks FHIR service upgrade
1
NIST requirements for Sage CHOP CHOP task Sage Sage Bionetworks task SevenBridges SevenBridges task
#18 opened Jan 11, 2023 by ByroneCole-SageBionetworks
1 of 3 tasks
Compliance
@allisonheath @jaeddy @jackDiGi
NIST controls for CHOP CHOP CHOP task Sage Sage Bionetworks task SevenBridges SevenBridges task
#17 opened Jan 11, 2023 by ByroneCole-SageBionetworks Compliance
@allisonheath @jaeddy @jackDiGi
1
Clearinghouse for SBG CHOP CHOP task Sage Sage Bionetworks task SevenBridges SevenBridges task
#16 opened Jan 11, 2023 by ByroneCole-SageBionetworks Compliance
@mattions @suryasaha @jackDiGi
2
IDs used by the FHIR resources CHOP CHOP task
#15 opened Jan 11, 2023 by ByroneCole-SageBionetworks INCLUDE external ID generation by CHOP service
@allisonheath
1
Identify participants across multiple cohorts CHOP CHOP task
#14 opened Jan 11, 2023 by ByroneCole-SageBionetworks INCLUDE external ID generation by CHOP service
@allisonheath
1
Biospecimens/subjects, data files, samples, all need linking system CHOP CHOP task
#13 opened Jan 11, 2023 by ByroneCole-SageBionetworks INCLUDE external ID generation by CHOP service
@allisonheath
1
Mapping Synapse IDs to portal “labels” CHOP CHOP task
#11 opened Jan 11, 2023 by ByroneCole-SageBionetworks INCLUDE external ID generation by CHOP service
@allisonheath
1
Tracking intermediate stages in data flow Sage Sage Bionetworks task
#10 opened Jan 11, 2023 by ByroneCole-SageBionetworks
3 tasks
Transition all data hosting and release process through Synapse
@jaeddy
dbGaP review and completion confirmation CHOP CHOP task Sage Sage Bionetworks task
#9 opened Jan 11, 2023 by kjflynn dbGaP submission
@milen-sage
2
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