Merge pull request #161 from information-artifact-ontology/r2023-11-02

Release 2 nov 2023
information-artifact-ontology · Nov 2, 2023 · 378fc05 · 378fc05
2 parents 57ef60c + 484a24d
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diff --git a/omo-full.json b/omo-full.json
@@ -121,9 +121,9 @@
         "val" : "https://creativecommons.org/publicdomain/zero/1.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2023-10-12"
+        "val" : "2023-11-02"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-10-12/omo-full.json"
+      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo-full.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/IAO_0000002",
@@ -1831,6 +1831,10 @@
         "definition" : {
           "val" : "The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese."
         },
+        "synonyms" : [ {
+          "pred" : "hasExactSynonym",
+          "val" : "INN"
+        } ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
           "val" : "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) \"paracetamol\". In some cases such as this one, the INN might be the same as the ontology's primary label"
@@ -1867,6 +1871,28 @@
           "val" : "2023-10-12"
         } ]
       }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003012",
+      "lbl" : "acronym",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms."
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
+          "val" : "NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced."
+        }, {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/135"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-11-01"
+        } ]
+      }
     }, {
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym",
       "lbl" : "has broad synonym",

diff --git a/omo-full.obo b/omo-full.obo
@@ -1,5 +1,18 @@
 format-version: 1.2
-data-version: omo/releases/2023-10-12/omo-full.owl
+data-version: omo/releases/2023-11-02/omo-full.owl
+synonymtypedef: OMO:0003000 "abbreviation"
+synonymtypedef: OMO:0003001 "ambiguous synonym"
+synonymtypedef: OMO:0003002 "dubious synonym"
+synonymtypedef: OMO:0003003 "layperson synonym"
+synonymtypedef: OMO:0003004 "plural form"
+synonymtypedef: OMO:0003005 "UK spelling synonym"
+synonymtypedef: OMO:0003006 "misspelling"
+synonymtypedef: OMO:0003007 "misnomer"
+synonymtypedef: OMO:0003008 "previous name"
+synonymtypedef: OMO:0003009 "legal name"
+synonymtypedef: OMO:0003010 "International Nonproprietary Name"
+synonymtypedef: OMO:0003011 "latin term"
+synonymtypedef: OMO:0003012 "acronym"
 ontology: omo/omo-full
 property_value: defaultLanguage "en" xsd:string
 property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string
@@ -40,7 +53,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He
 property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string
 property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
-property_value: owl:versionInfo "2023-10-12" xsd:string
+property_value: owl:versionInfo "2023-11-02" xsd:string
 
 [Term]
 id: IAO:0000027

diff --git a/omo-full.owl b/omo-full.owl
@@ -12,7 +12,7 @@
      xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omo/omo-full.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-10-12/omo-full.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo-full.owl"/>
         <protege:defaultLanguage>en</protege:defaultLanguage>
         <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
         <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
@@ -52,7 +52,7 @@
         <dc:description xml:lang="en">An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).</dc:description>
         <dc:title xml:lang="en">OBO Metadata Ontology</dc:title>
         <terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
-        <owl:versionInfo>2023-10-12</owl:versionInfo>
+        <owl:versionInfo>2023-11-02</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -592,7 +592,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>abbreviation</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -605,7 +605,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>ambiguous synonym</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -618,7 +618,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>dubious synonym</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -632,7 +632,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>layperson synonym</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -646,7 +646,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>plural form</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -660,7 +660,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>UK spelling synonym</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -673,7 +673,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>misspelling</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -686,7 +686,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
         <rdfs:label>misnomer</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -700,7 +700,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-07-25</terms:created>
         <rdfs:label>previous name</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -714,7 +714,7 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-07-27</terms:created>
         <rdfs:label>legal name</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -727,8 +727,9 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/149"/>
         <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-09-30</terms:created>
+        <oboInOwl:hasExactSynonym>INN</oboInOwl:hasExactSynonym>
         <rdfs:label>International Nonproprietary Name</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -742,7 +743,21 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
         <terms:contributor rdf:resource="https://orcid.org/0000-0002-1773-2692"/>
         <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-10-12</terms:created>
         <rdfs:label>latin term</rdfs:label>
-        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003012 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003012">
+        <obo:IAO_0000112>NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced.</obo:IAO_0000112>
+        <obo:IAO_0000115>A synonym type for describing abbreviations that are a part of the full name&apos;s words, such as initialisms or alphabetisms.</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/135"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-11-01</terms:created>
+        <rdfs:label>acronym</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
     </owl:AnnotationProperty>
 
 
@@ -855,9 +870,9 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
-    <!-- http://www.geneontology.org/formats/oboInOwl#SynonymType -->
+    <!-- http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty -->
 
-    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
 
 
 

diff --git a/omo.json b/omo.json
@@ -121,9 +121,9 @@
         "val" : "https://creativecommons.org/publicdomain/zero/1.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2023-10-12"
+        "val" : "2023-11-02"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-10-12/omo.json"
+      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/IAO_0000002",
@@ -1831,6 +1831,10 @@
         "definition" : {
           "val" : "The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese."
         },
+        "synonyms" : [ {
+          "pred" : "hasExactSynonym",
+          "val" : "INN"
+        } ],
         "basicPropertyValues" : [ {
           "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
           "val" : "CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) \"paracetamol\". In some cases such as this one, the INN might be the same as the ontology's primary label"
@@ -1867,6 +1871,28 @@
           "val" : "2023-10-12"
         } ]
       }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003012",
+      "lbl" : "acronym",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms."
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
+          "val" : "NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced."
+        }, {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/135"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-11-01"
+        } ]
+      }
     }, {
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym",
       "lbl" : "has broad synonym",

diff --git a/omo.obo b/omo.obo
@@ -1,5 +1,18 @@
 format-version: 1.2
-data-version: releases/2023-10-12
+data-version: releases/2023-11-02
+synonymtypedef: OMO:0003000 "abbreviation"
+synonymtypedef: OMO:0003001 "ambiguous synonym"
+synonymtypedef: OMO:0003002 "dubious synonym"
+synonymtypedef: OMO:0003003 "layperson synonym"
+synonymtypedef: OMO:0003004 "plural form"
+synonymtypedef: OMO:0003005 "UK spelling synonym"
+synonymtypedef: OMO:0003006 "misspelling"
+synonymtypedef: OMO:0003007 "misnomer"
+synonymtypedef: OMO:0003008 "previous name"
+synonymtypedef: OMO:0003009 "legal name"
+synonymtypedef: OMO:0003010 "International Nonproprietary Name"
+synonymtypedef: OMO:0003011 "latin term"
+synonymtypedef: OMO:0003012 "acronym"
 ontology: omo
 property_value: defaultLanguage "en" xsd:string
 property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string
@@ -40,7 +53,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He
 property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string
 property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
-property_value: owl:versionInfo "2023-10-12" xsd:string
+property_value: owl:versionInfo "2023-11-02" xsd:string
 
 [Term]
 id: IAO:0000027