Preprocess OMO to inject OBO format annotations

information-artifact-ontology · Nov 14, 2024 · 6fea9a3 · 6fea9a3
1 parent 234a208
commit 6fea9a3
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diff --git a/src/ontology/omo.Makefile b/src/ontology/omo.Makefile
@@ -13,3 +13,8 @@ MERGE_TEMPLATE=../templates/annotation_properties.tsv
 merge_template: $(MERGE_TEMPLATE)
 	$(ROBOT) template --prefix "OMO: http://purl.obolibrary.org/obo/OMO_" --merge-before --input $(SRC) \
  --template $(MERGE_TEMPLATE) convert -f owl -o $(SRC)
+
+
+$(EDIT_PREPROCESSED): $(SRC)
+	$(ROBOT) query --input $< --update $(SPARQLDIR)/inject-is-metadata-tag.ru  \
+		convert --format ofn --output $@
diff --git a/src/sparql/inject-is-metadata-tag.ru b/src/sparql/inject-is-metadata-tag.ru
@@ -0,0 +1,11 @@
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX oboInOwl: <http://www.geneontology.org/formats/oboInOwl#>
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
+
+INSERT {
+  ?property oboInOwl:is_metadata_tag "true"^^xsd:boolean .
+}
+WHERE {
+  ?property rdf:type owl:AnnotationProperty .
+}