Merge pull request #129 from information-artifact-ontology/release15-…

…05-2023 May 2023 release
information-artifact-ontology · May 15, 2023 · 9f2536b · 9f2536b
2 parents 106b058 + 83e0301
commit 9f2536b
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diff --git a/omo-full.json b/omo-full.json
@@ -121,9 +121,9 @@
         "val" : "https://creativecommons.org/publicdomain/zero/1.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2023-02-19"
+        "val" : "2023-05-15"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-02-19/omo-full.json"
+      "version" : "http://purl.obolibrary.org/obo/omo/releases/2023-05-15/omo-full.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/IAO_0000002",
@@ -1593,6 +1593,132 @@
           "val" : "https://orcid.org/0000-0002-8688-6599"
         } ]
       }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003000",
+      "lbl" : "abbreviation",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing abbreviations or initalisms"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
+          "val" : "CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)"
+        }, {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003001",
+      "lbl" : "ambiguous synonym",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing ambiguous synonyms"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003002",
+      "lbl" : "dubious synonym",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing dubious synonyms"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003003",
+      "lbl" : "layperson synonym",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing layperson or colloquial synonyms"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
+          "val" : "EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym)"
+        }, {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003004",
+      "lbl" : "plural form",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing pluralization synonyms"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
+          "val" : "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)"
+        }, {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/OMO_0003005",
+      "lbl" : "UK spelling synonym",
+      "type" : "PROPERTY",
+      "meta" : {
+        "definition" : {
+          "val" : "A synonym type for describing UK spelling variants"
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000112",
+          "val" : "CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym)"
+        }, {
+          "pred" : "http://purl.obolibrary.org/obo/IAO_0000233",
+          "val" : "https://github.com/information-artifact-ontology/ontology-metadata/issues/122"
+        }, {
+          "pred" : "http://purl.org/dc/terms/contributor",
+          "val" : "https://orcid.org/0000-0003-4423-4370"
+        }, {
+          "pred" : "http://purl.org/dc/terms/created",
+          "val" : "2023-03-03"
+        } ]
+      }
     }, {
       "id" : "http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym",
       "lbl" : "has broad synonym",

diff --git a/omo-full.obo b/omo-full.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: omo/releases/2023-02-19/omo-full.owl
+data-version: omo/releases/2023-05-15/omo-full.owl
 ontology: omo/omo-full
 property_value: defaultLanguage "en" xsd:string
 property_value: http://purl.org/dc/elements/1.1/contributor "Adam Goldstein" xsd:string
@@ -40,7 +40,7 @@ property_value: http://purl.org/dc/elements/1.1/contributor "Yongqun (Oliver) He
 property_value: http://purl.org/dc/elements/1.1/description "An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO)." xsd:string
 property_value: http://purl.org/dc/elements/1.1/title "OBO Metadata Ontology" xsd:string
 property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
-property_value: owl:versionInfo "2023-02-19" xsd:string
+property_value: owl:versionInfo "2023-05-15" xsd:string
 
 [Term]
 id: IAO:0000027

diff --git a/omo-full.owl b/omo-full.owl
@@ -12,7 +12,7 @@
      xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omo/omo-full.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-02-19/omo-full.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omo/releases/2023-05-15/omo-full.owl"/>
         <protege:defaultLanguage>en</protege:defaultLanguage>
         <dc:contributor xml:lang="en">Adam Goldstein</dc:contributor>
         <dc:contributor xml:lang="en">Alan Ruttenberg</dc:contributor>
@@ -52,7 +52,7 @@
         <dc:description xml:lang="en">An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Information Artifact Ontology (IAO).</dc:description>
         <dc:title xml:lang="en">OBO Metadata Ontology</dc:title>
         <terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
-        <owl:versionInfo>2023-02-19</owl:versionInfo>
+        <owl:versionInfo>2023-05-15</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -583,6 +583,88 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OMO_0003000 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003000">
+        <obo:IAO_0000112>CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)</obo:IAO_0000112>
+        <obo:IAO_0000115>A synonym type for describing abbreviations or initalisms</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>abbreviation</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003001 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003001">
+        <obo:IAO_0000115>A synonym type for describing ambiguous synonyms</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>ambiguous synonym</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003002 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003002">
+        <obo:IAO_0000115>A synonym type for describing dubious synonyms</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>dubious synonym</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003003 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003003">
+        <obo:IAO_0000112>EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym)</obo:IAO_0000112>
+        <obo:IAO_0000115>A synonym type for describing layperson or colloquial synonyms</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>layperson synonym</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003004 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003004">
+        <obo:IAO_0000112>CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)</obo:IAO_0000112>
+        <obo:IAO_0000115>A synonym type for describing pluralization synonyms</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>plural form</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/OMO_0003005 -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/OMO_0003005">
+        <obo:IAO_0000112>CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym)</obo:IAO_0000112>
+        <obo:IAO_0000115>A synonym type for describing UK spelling variants</obo:IAO_0000115>
+        <obo:IAO_0000233 rdf:resource="https://github.com/information-artifact-ontology/ontology-metadata/issues/122"/>
+        <terms:contributor rdf:resource="https://orcid.org/0000-0003-4423-4370"/>
+        <terms:created rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2023-03-03</terms:created>
+        <rdfs:label>UK spelling synonym</rdfs:label>
+        <rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+    </owl:AnnotationProperty>
+
+
+
     <!-- http://purl.org/dc/elements/1.1/contributor -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/contributor"/>
@@ -673,12 +755,30 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- http://purl.org/dc/terms/contributor -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
+
+
+
+    <!-- http://purl.org/dc/terms/created -->
+
+    <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/created"/>
+
+
+
     <!-- http://purl.org/dc/terms/license -->
 
     <owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
 
 
 
+    <!-- http://www.geneontology.org/formats/oboInOwl#SynonymType -->
+
+    <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymType"/>
+
+
+
     <!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
 
     <owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
@@ -743,6 +843,23 @@ EquivalentTo: xsd:integer[&gt; 2151 , &lt;= 2300]
 
 
 
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Datatypes
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+
+
+
+    <!-- http://www.w3.org/2001/XMLSchema#date -->
+
+    <rdfs:Datatype rdf:about="http://www.w3.org/2001/XMLSchema#date"/>
+
+
+
     <!-- 
     ///////////////////////////////////////////////////////////////////////////////////////
     //