assisted & standardised assessment of gene variations from Sanger data
server: http://bat.infspire.org/genomepd/glass
citation: http://www.ncbi.nlm.nih.gov/pubmed/29036643
- RStudio or Shiny Server
- install chromatography package
devtools::install("[GLASS_dir]/chromatography/")
tested with:
sessionInfo()
R version 3.3.3 (2017-03-06)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X El Capitan 10.11.6
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] seqinr_3.3-6 zoo_1.8-0 xlsx_0.5.7 xlsxjars_0.6.1
[5] rJava_0.9-8 sangerseqR_1.10.0 shinyBS_0.61 DT_0.2
[9] stringi_1.1.5 stringr_1.2.0 chromatography_0.0.0.9000 htmlwidgets_0.8
[13] rjson_0.2.15 data.table_1.10.4 shinyjs_0.9 shiny_1.0.3
[17] Biostrings_2.42.1 XVector_0.14.1 IRanges_2.8.2 S4Vectors_0.12.2
[21] BiocGenerics_0.20.0
loaded via a namespace (and not attached):
[1] Rcpp_0.12.10 magrittr_1.5 zlibbioc_1.20.0 lattice_0.20-35 xtable_1.8-2 R6_2.2.1 tools_3.3.3
[8] grid_3.3.3 miniUI_0.1.1 htmltools_0.3.6 ade4_1.7-6 yaml_2.1.14 digest_0.6.12 mime_0.5
[15] jsonlite_1.4 httpuv_1.3.3