This is the first release of the "Facilitator of the local deployment of the EFSA One Health Whole-Genome Sequencing analytical pipeline".
This is a command line tool that aims to facilitate the deployment of the EFSA One Health WGS analytical pipeline in local settings. This is a tool that:
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allows providing multiple samples as input (batch analysis)
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compiles the results of individual samples into user- and surveillance-oriented tabular reports
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enables the integration of results of previous runs for routine genomic surveillance, i.e., can perform the cumulative analysis of growing datasets.