Added culture type

app/controllers/api/v1/culture_types_controller.rb

@@ -0,0 +1,9 @@
+module Api
+  module V1
+    class CultureTypesController < ApiController
+      def index
+        render_paginated CultureType.all
+      end
+    end
+  end
+end

app/models/culture_type.rb

@@ -0,0 +1,3 @@
+class CultureType < ApplicationRecord
+  validates :name, presence: true
+end

app/serializers/culture_type_serializer.rb

@@ -0,0 +1,3 @@
+class CultureTypeSerializer < ActiveModel::Serializer
+  attributes :id, :name, :created_at, :updated_at
+end

config/routes.rb

@@ -14,6 +14,7 @@
       end
       resources :labs, only: [:index, :create]
       resources :specimen_sources, only: [:index]
+      resources :culture_types, only: [:index]
     end
   end
 end

db/migrate/20190705163829_create_culture_types.rb

@@ -0,0 +1,9 @@
+class CreateCultureTypes < ActiveRecord::Migration[5.1]
+  def change
+    create_table :culture_types do |t|
+      t.string :name
+
+      t.timestamps
+    end
+  end
+end

db/schema.rb

@@ -10,7 +10,7 @@
 #
 # It's strongly recommended that you check this file into your version control system.
 
-ActiveRecord::Schema.define(version: 20190702135353) do
+ActiveRecord::Schema.define(version: 20190705163829) do
 
   # These are extensions that must be enabled in order to support this database
   enable_extension "plpgsql"
@@ -41,6 +41,12 @@
     t.index ["reset_password_token"], name: "index_admin_users_on_reset_password_token", unique: true
   end
 
+  create_table "culture_types", force: :cascade do |t|
+    t.string "name"
+    t.datetime "created_at", null: false
+    t.datetime "updated_at", null: false
+  end
+
   create_table "labs", force: :cascade do |t|
     t.string "name"
     t.string "address"

db/seeds.rb

@@ -18,4 +18,13 @@
   SpecimenSource.find_or_create_by(
     name: row['name']
   )
+end
+
+CSV.foreach(
+  Rails.root.join('db', 'seeds', "culture_type.csv"), 
+  headers: true
+) do |row|
+  CultureType.find_or_create_by(
+    name: row['name']
+  )
 end

db/seeds/culture_type.csv

@@ -0,0 +1,68 @@
+name
+Culture Type Original
+AEROBIC
+Aerobic culture
+Anaerobic culture
+Bacterial Aerobic
+Bacterial Culture
+Bacterial Culture, Blood
+Bacterial Culture/Smear (Aerobic)
+Bacterial Culture/Smear (Aerobic/Anaerobic)
+Bacterial Stool Culture/NAT
+Bacterial Stool Nucleic Acid Test
+Bacterial/Yeast Culture, Blood
+Blood - Culture & Sensitivity
+Blood anaerobic
+Blood culture
+BLOOD CULTURE & SUSCEPTIBILITY (BACTEC)
+Body Fluid - Culture & Sensitivity
+Body fluid culture
+Catheter Tip Culture & Sensitivity
+Central Line Tip for Culture & Sensitivity
+CSF Culture & Sensitivity
+CSF Culture and gram stain
+Culture & Sensitivity
+CULTURE AEROBIC
+CULTURE AEROBIC & SUSCEPTIBILITY
+CULTURE ANAEROBIC
+Culture and gram stain
+Culture and Sensitivity
+CULTURE STOOL
+CULTURE SURVEILLANCE, MRSA
+Culture Urine
+CULTURE URINE WITH SUSCEPTIBILITY
+Cystic Fibrosis Respiratory Culture
+Fungal Culture
+Gonococcus Culture
+Group B Streptococcus Susceptibility
+High Vaginal Swab Culture and Sensitivity
+HVS Culture for Group B streptococcus
+MRSA Surveillance Culture
+Organism Identification and Susceptibility
+Other (specify in additional information)
+Paired Blood Culture & Sensitivity
+Peritoneal Fluid Culture & Sensitivity
+Pleural Fluid Culture & Sensitivity
+Pus Culture & Sensitivity
+Quantitative Culture Tissue
+Respiratory Culture and Smear
+Respiratory Surveillance Culture
+Skin Culture & Sensitivity
+Specimen source not given
+Sputum culture
+Sputum Culture & Sensitivity
+Stool Culture
+Stool Culture & Sensitivity
+Stool ID AND SENSITIVITY
+Surveillance Culture
+Susceptibility
+Throat culture
+Throat Swab Culture & Sensitivity
+Tip Culture & Sensitivity
+Tissue Culture & Sensitivity
+Tracheal Secretions Culture & Sensitivity
+Urine culture
+Urine Culture & Sensitivity
+Wound ID AND SENSITIVITY
+Wound Swab Culture & Sensitivity
+Yeast Identification

spec/controllers/api/v1/culture_types_controller_spec.rb

@@ -0,0 +1,28 @@
+require 'rails_helper'
+
+RSpec.describe Api::V1::CultureTypesController, type: :controller do
+  describe 'GET /culture_types' do
+    context 'with an unauthenticated user' do
+      before { get :index }
+
+      it 'should respond unauthorized' do
+        expect(response).to have_http_status(:unauthorized)
+      end
+    end
+
+    context 'with an authenticated user' do
+      let(:user) { create :user }
+      let!(:culture_types) { create_list :culture_type, 10 }
+      before do
+        authenticate(user)
+        get :index
+      end
+
+      it 'responds ok' do
+        expect(response).to have_http_status(:ok)
+      end
+
+      it_behaves_like 'a paginated request', CultureType.all
+    end
+  end
+end

spec/controllers/api/v1/specimen_sources_controller_spec.rb

@@ -12,7 +12,7 @@
 
     context 'with an authenticated user' do
       let(:user) { create :user }
-      let!(:labs) { create_list :specimen_source, 10 }
+      let!(:specimen_sources) { create_list :specimen_source, 10 }
       before do
         authenticate(user)
         get :index

spec/factories/culture_types.rb

@@ -0,0 +1,5 @@
+FactoryBot.define do
+  factory :culture_type do
+    name { FFaker::HealthcareIpsum.word }
+  end
+end

spec/models/culture_type_spec.rb

@@ -0,0 +1,9 @@
+require 'rails_helper'
+
+RSpec.describe CultureType, type: :model do
+  subject { build :culture_type }
+
+  it { is_expected.to validate_presence_of(:name) }
+
+  it { is_expected.to be_valid }
+end