This repository contains resources and assignments for the UCL Neuropixels Course 2024.
Prior to the course we recommend that you work through the installation and data download sections to ensure you have all the necessary software installed and have access to the data that will be used during the assignments:
- Link to installation instructions for the IBL-related content
- Link to data download instructions for the IBL-related content
- Link to preparation instructions for UnitMatch
- Link to installation instructions for Bombcell. For now, bombcell is in MATLAB-only, but a Python version is coming in the next month. If you need a MATLAB license, see the details on slack or message us: [email protected]
- Link to installation instructions for phy
- Link to the Paxinos Atlas
If you run into any issues during the installation or data download process please write a message in the Neuropixels course dedicated slack channel or make an in issue in this repository.
Please refer to the instructions in the individual folders for the following assignments.
Day 1
Day 2
- 2.5.1 Practical: Quality control with Bombcell, Phy and IBL metrics:
- 2.5.2 Practical: Align data to histology
- 2.5.3 Practical: Analyze neural activity on the IBL website
- 2.5.4 Practical: Match neurons across days with UnitMatch