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Encoding final code #77

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Encoding final code #77

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Commits on May 8, 2023

  1. Updates to plotting funcs

    @berkgercek
    berkgercek committed May 8, 2023
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Commits on Jun 5, 2023

  1. subpanel plot script for only units used in paper

    @berkgercek
    berkgercek committed Jun 5, 2023
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Commits on Jun 16, 2023

  1. Compatibility for plots with pandas 2.0

    @berkgercek
    berkgercek committed Jun 16, 2023
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  2. Refactor subpanel_plots

    @berkgercek
    berkgercek committed Jun 16, 2023
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Commits on Jun 22, 2023

  1. Changes to allow for direct plotting of fig panels

    @berkgercek
    berkgercek committed Jun 22, 2023
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  2. Update utils.py

    @mschart
    mschart authored Jun 22, 2023
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  3. add Berk's panels

    @mschart
    mschart authored Jun 22, 2023
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  4. Rename bwm_figures.py to bwm_fig.py

    @mschart
    mschart authored Jun 22, 2023
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Commits on Jun 23, 2023

  1. Include Berk's panels

    @mschart
    mschart authored Jun 23, 2023
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  2. Update and rename bwm_fig.py to bwm_figs.py 

    improve result loading
    @mschart
    mschart authored Jun 23, 2023
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Commits on Jun 26, 2023

  1. works now for block, choice, stim, fback

    @mschart
    mschart authored Jun 26, 2023
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Commits on Jun 27, 2023

  1. Update bwm_figs.py

    @mschart
    mschart authored Jun 27, 2023
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Commits on Jul 3, 2023

  1. add some axis labels and table column names

    @mschart
    mschart authored Jul 3, 2023
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Commits on Jul 6, 2023

  1. add result pooling function

    @mschart
    mschart authored Jul 6, 2023
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  2. harmonize file paths

    @mschart
    mschart authored Jul 6, 2023
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Commits on Sep 22, 2023

  1. save fit weights

    @berkgercek
    berkgercek committed Sep 22, 2023
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Commits on Oct 3, 2023

  1. Update README.md

    @berkgercek
    berkgercek authored Oct 3, 2023
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  2. save kernels after fitting

    @berkgercek
    berkgercek committed Oct 3, 2023
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  3. saving kernels and analyze using manifold methods

    @berkgercek
    berkgercek committed Oct 3, 2023
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Commits on Dec 19, 2023

  1. Merge meta scripts into main

    @juhuntenburg @berkgercek
    juhuntenburg authored and berkgercek committed Dec 19, 2023
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  2. Update bwm_figures.py 

    Add trajectory sub panels
    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  3. add effect sizes to table

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  4. truncate values

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  5. mean and median for weight and age

    @GaelleChapuis @berkgercek
    GaelleChapuis authored and berkgercek committed Dec 19, 2023
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  6. remove pinned pandas version to match ibllib

    @oliche @berkgercek
    oliche authored and berkgercek committed Dec 19, 2023
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  7. qc adjustable in load_good_units

    @juhuntenburg @berkgercek
    juhuntenburg authored and berkgercek committed Dec 19, 2023
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  8. small fix about qc value

    @juhuntenburg @berkgercek
    juhuntenburg authored and berkgercek committed Dec 19, 2023
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  9. add canonical info

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  10. Include wheel speed and velocity results

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  11. fix Cosmos column

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  12. fix Beryl Cosmos map for table

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  13. add column for Cosmos names

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  14. swap columns

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  15. Add files via upload

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  16. add prior paper columns

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  17. again, less rounded

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  18. correct typo

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  19. Update region_info.csv

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  20. column name change

    @mschart @berkgercek
    mschart authored and berkgercek committed Dec 19, 2023
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  21. Atlas imports

    @k1o0 @berkgercek
    k1o0 authored and berkgercek committed Dec 19, 2023
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  22. groom the repository

    @oliche @berkgercek
    oliche authored and berkgercek committed Dec 19, 2023
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  23. fix links ?

    @oliche @berkgercek
    oliche authored and berkgercek committed Dec 19, 2023
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  24. add a link to the Imbizo course

    @oliche @berkgercek
    oliche authored and berkgercek committed Dec 19, 2023
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  25. fix ONE link

    @juhuntenburg @berkgercek
    juhuntenburg authored and berkgercek committed Dec 19, 2023
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  26. new release

    @juhuntenburg @berkgercek
    juhuntenburg authored and berkgercek committed Dec 19, 2023
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Commits on Jan 6, 2024

  1. Merge remote-tracking branch 'origin/main' into encoding-revisions

    @berkgercek
    berkgercek committed Jan 6, 2024
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Commits on Jan 29, 2024

  1. Edits to fix fns

    @berkgercek
    berkgercek committed Jan 29, 2024
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Commits on Jun 23, 2024

  1. Simpler dockerfile

    @berkgercek
    berkgercek committed Jun 23, 2024
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  2. Merge branch 'main' into encoding-revisions

    @berkgercek
    berkgercek committed Jun 23, 2024
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Commits on Jul 1, 2024

  1. Merge branch 'develop' into encoding-revisions

    @oliche
    oliche committed Jul 1, 2024
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Commits on Jul 15, 2024

  1. Minor docker file changes

    @berkgercek
    berkgercek committed Jul 15, 2024
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  2. Merge branch 'encoding-revisions' of https://github.com/int-brain-lab… 

    …/paper-brain-wide-map into encoding-revisions
    @berkgercek
    berkgercek committed Jul 15, 2024
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Commits on Sep 9, 2024

  1. changes to load scripts

    @berkgercek
    berkgercek committed Sep 9, 2024
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  2. Add option for early RT splits

    @berkgercek
    berkgercek committed Sep 9, 2024
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  3. fixed bug in saving unit cluster IDs

    @berkgercek
    berkgercek committed Sep 9, 2024
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Commits on Sep 13, 2024

  1. allow for early RT fitting

    @berkgercek
    berkgercek committed Sep 13, 2024
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Commits on Sep 16, 2024

  1. Docker updates and early RT fitting

    @berkgercek
    berkgercek committed Sep 16, 2024
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  2. bugfix

    @berkgercek
    berkgercek committed Sep 16, 2024
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  3. dockerfile fix

    @berkgercek
    berkgercek committed Sep 16, 2024
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  4. Update docker spec and remove pytorch deps

    @berkgercek
    berkgercek committed Sep 16, 2024
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