Bump the apptainer group in /apptainer/python with 5 updates

[dependabot]

Bumps the apptainer group in /apptainer/python with 5 updates:

Package	From	To
numpy	2.2.4	2.3.4
psutil	7.1.0	7.1.2
mkl	2025.2.0	2025.3.0
mkl-include	2025.2.0	2025.3.0
intel-openmp	2025.2.1	2025.3.0

Updates numpy from 2.2.4 to 2.3.4

Release notes

Sourced from numpy's releases.

v2.3.4 (Oct 15, 2025)

NumPy 2.3.4 Release Notes

The NumPy 2.3.4 release is a patch release split between a number of maintenance updates and bug fixes. This release supports Python versions 3.11-3.14. This release is based on Python 3.14.0 final.

Changes

The npymath and npyrandom libraries now have a .lib rather than a .a file extension on win-arm64, for compatibility for building with MSVC and setuptools. Please note that using these static libraries is discouraged and for existing projects using it, it's best to use it with a matching compiler toolchain, which is clang-cl on Windows on Arm.

(gh-29750)

Contributors

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• !DWesl
• Charles Harris
• Christian Barbia +
• Evgeni Burovski
• Joren Hammudoglu
• Maaz +
• Mateusz Sokół
• Matti Picus
• Nathan Goldbaum
• Ralf Gommers
• Riku Sakamoto +
• Sandeep Gupta +
• Sayed Awad
• Sebastian Berg
• Sergey Fedorov +
• Warren Weckesser
• dependabot[bot]

Pull requests merged

A total of 30 pull requests were merged for this release.

• #29725: MAINT: Prepare 2.3.x for further development
• #29781: MAINT: Pin some upstream dependences
• #29782: BLD: enable x86-simd-sort to build on KNL with -mavx512f
• #29783: BUG: Include python-including headers first (#29281)
• #29784: TYP: fix np.number and np.*integer method declaration
• #29785: TYP: mypy 1.18.1

... (truncated)

Commits

• 1458b9e REL: Prepare for the NumPy 2.3.4 release (#29955)
• 7583bed Merge pull request #29950 from charris/backport-29885
• 3186751 Merge pull request #29949 from charris/backport-29948
• 7fd2ad9 STY: rename @classmethod arg to cls
• fe8447d MAINT: Simplify string arena growth strategy (#29885)
• a90f073 Merge pull request #29940 from charris/backport-29937
• 55d91ab MAINT: Bump pypa/cibuildwheel from 3.1.4 to 3.2.1
• e2f0383 Merge pull request #29926 from charris/backport-29609
• b427e83 BUG: fix negative samples generated by Wald distribution (#29609)
• 36363d6 Merge pull request #29922 from charris/backport-29914
• Additional commits viewable in compare view

Updates psutil from 7.1.0 to 7.1.2

Changelog

Sourced from psutil's changelog.

7.1.2

2025-10-25

Enhancements

• 2657_: stop publishing prebuilt Linux and Windows wheels for 32-bit Python. 32-bit CPython is still supported, but psutil must now be built from source. 2565_: produce wheels for free-thread cPython 3.13 and 3.14 (patch by Lysandros Nikolaou)

Bug fixes

• 2650_, [macOS]: Process.cmdline()_ and Process.environ()_ may incorrectly raise NoSuchProcess_ instead of ZombieProcess_.
• 2658_, [macOS]: double free() in Process.environ()_ when it fails internally. This posed a risk of segfault.
• 2662_, [macOS]: massive C code cleanup to guard against possible segfaults which were (not so) sporadically spotted on CI.

Compatibility notes

• 2657_: stop publishing prebuilt Linux and Windows wheels for 32-bit Python.

7.1.1

2025-10-19

Enhancements

• 2645_, [SunOS]: dropped support for SunOS 10.
• 2646_, [SunOS]: add CI test runner for SunOS.

Bug fixes

• 2641_, [SunOS]: cannot compile psutil from sources due to missing C include.
• 2357_, [SunOS]: Process.cmdline()_ does not handle spaces properly. (patch by Ben Raz)

Compatibility notes

• 2645_: SunOS 10 is no longer supported.

Commits

• c948ef0 Update HISTORY.rst
• 7dfd0ed Build 3.14t wheels (#2659)
• cbc0ba9 C: add missing ;
• a6ca9e1 BSD: Py_INCREF None value + use psutil_badargs()
• 3ed6417 BSD: kinfo_getfile() check args + INT_MAX
• 742c9b5 [macOS] lots of fixes (#2662) - should fix macOS segfault #2661
• 9d1ba75 Update pyproject.toml
• 68585ca [macOS] various fixes to prevent potential segfaults (#2660)
• 439358d Update HISTORY.rst
• 24fc7db macos, fix #2658: don't double-free in case of environ() error
• Additional commits viewable in compare view

Updates mkl from 2025.2.0 to 2025.3.0

Commits

• See full diff in compare view

Updates mkl-include from 2025.2.0 to 2025.3.0

Updates intel-openmp from 2025.2.1 to 2025.3.0

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[github-actions]

Dependency Review

The following issues were found:

• ✅ 0 vulnerable package(s)
• ✅ 0 package(s) with incompatible licenses
• ✅ 0 package(s) with invalid SPDX license definitions
• ⚠️ 3 package(s) with unknown licenses.

See the Details below.

License Issues

apptainer/python/requirements.txt

Package	Version	License	Issue Type
intel-openmp	2025.3.1	Null	Unknown License
mkl-include	2025.3.0	Null	Unknown License
mkl	2025.3.0	Null	Unknown License

OpenSSF Scorecard

Package	Version	Score	Details
pip/intel-openmp	2025.3.1	Unknown	Unknown
pip/mkl	2025.3.0	Unknown	Unknown
pip/mkl-include	2025.3.0	Unknown	Unknown
pip/numpy	2.3.4	🟢 7.2	Details Check Score Reason Code-Review 🟢 10 all changesets reviewed Maintained 🟢 10 30 commit(s) and 22 issue activity found in the last 90 days -- score normalized to 10 Dependency-Update-Tool 🟢 10 update tool detected Dangerous-Workflow 🟢 10 no dangerous workflow patterns detected Packaging ⚠️ -1 packaging workflow not detected Binary-Artifacts 🟢 10 no binaries found in the repo Token-Permissions 🟢 9 detected GitHub workflow tokens with excessive permissions Pinned-Dependencies 🟢 3 dependency not pinned by hash detected -- score normalized to 3 CII-Best-Practices ⚠️ 0 no effort to earn an OpenSSF best practices badge detected Vulnerabilities ⚠️ 0 26 existing vulnerabilities detected Signed-Releases ⚠️ 0 Project has not signed or included provenance with any releases. SAST 🟢 9 SAST tool detected but not run on all commits Branch-Protection 🟢 3 branch protection is not maximal on development and all release branches Security-Policy 🟢 9 security policy file detected Fuzzing 🟢 10 project is fuzzed License 🟢 9 license file detected CI-Tests 🟢 10 16 out of 16 merged PRs checked by a CI test -- score normalized to 10 Contributors 🟢 10 project has 101 contributing companies or organizations
pip/psutil	7.1.3	🟢 5.7	Details Check Score Reason Dangerous-Workflow 🟢 10 no dangerous workflow patterns detected Security-Policy 🟢 10 security policy file detected Maintained 🟢 10 30 commit(s) and 19 issue activity found in the last 90 days -- score normalized to 10 Code-Review ⚠️ 1 Found 3/30 approved changesets -- score normalized to 1 Packaging ⚠️ -1 packaging workflow not detected Token-Permissions ⚠️ 0 detected GitHub workflow tokens with excessive permissions Binary-Artifacts 🟢 10 no binaries found in the repo CII-Best-Practices ⚠️ 0 no effort to earn an OpenSSF best practices badge detected Pinned-Dependencies ⚠️ 0 dependency not pinned by hash detected -- score normalized to 0 License 🟢 10 license file detected Vulnerabilities 🟢 10 0 existing vulnerabilities detected Fuzzing 🟢 10 project is fuzzed Signed-Releases ⚠️ -1 no releases found Branch-Protection ⚠️ 0 branch protection not enabled on development/release branches SAST ⚠️ 0 SAST tool is not run on all commits -- score normalized to 0

Scanned Files

• apptainer/python/requirements.txt