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21
DT_flood/workflows/cwl_OSCAR/oscar_services/sfincs-interlink.yaml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,21 @@ | ||
| functions: | ||
| oscar: | ||
| - cluster-id: | ||
| name: sfincs-interlink | ||
| cpu: '4.0' | ||
| memory: 6Gi | ||
| image: docker://deltares/sfincs-cpu:sfincs-v2.1.1-Dollerup-Release | ||
| script: sfincs_interlink_script.sh | ||
| log_level: DEBUG # To avoid supervisor logs in response | ||
| interlink_node_name: vega-new-vk | ||
| annotations: | ||
| slurm-job.vk.io/singularity-options: --no-home --no-mount /exa5 | ||
| slurm-job.vk.io/singularity-mounts: --bind /ceph/hpc/home/ciangottinid/oscar_home:/tmp | ||
| job.vk.io/singularity-mounts: --bind /ceph/hpc/data/st2301-itwin-users/:/interlink/ | ||
| slurm-job.vk.io/flags: --job-name=test-sfincs --time=02:30:00 --nodes=1 | ||
| input: | ||
| - storage_provider: minio | ||
| path: sfincs/in | ||
| output: | ||
| - storage_provider: minio | ||
| path: sfincs/out |
5 changes: 5 additions & 0 deletions
5
DT_flood/workflows/cwl_OSCAR/oscar_services/sfincs-interlink_script.sh
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,5 @@ | ||
| OUTPUT_FILE="$TMP_OUTPUT_DIR/sfincs_output.tar" | ||
| tar -xvf "$INPUT_FILE_PATH" -C /data/ | ||
| sfincs | ||
| tar -cf sfincs_output.tar sfincs_map.nc sfincs_his.nc | ||
| mv /data/sfincs_output.tar $OUTPUT_FILE |
13 changes: 4 additions & 9 deletions
13
DT_flood/workflows/cwl_OSCAR/oscar_services/sfincs_script.sh
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,5 @@ | ||
| FILE_NAME=`basename "$INPUT_FILE_PATH"` | ||
| OUTPUT_FILE="$TMP_OUTPUT_DIR/$FILE_NAME.nc" | ||
| mkdir -p /model | ||
| tar -xvf "$INPUT_FILE_PATH" -C /model/ | ||
| /app/build/create_binaries/wflow_bundle/bin/wflow_cli /model/wflow_warmup/wflow_sbm.toml | ||
| mv /model/wflow_event/instate/instates.nc $OUTPUT_FILE | ||
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| OUTPUT_FILE="$TMP_OUTPUT_DIR/sfincs_output.tar" | ||
| tar -xvf "$INPUT_FILE_PATH" -C /data/ | ||
| sfincs | ||
| sfincs | ||
| tar -cf sfincs_output.tar sfincs_map.nc sfincs_his.nc | ||
| mv /data/sfincs_output.tar $OUTPUT_FILE |
2 changes: 1 addition & 1 deletion
2
...OSCAR/oscar_services/wflow_interlink.yaml → ...OSCAR/oscar_services/wflow-interlink.yaml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,6 @@ | ||
| functions: | ||
| oscar: | ||
| - oscarr: | ||
| - cluster-id: | ||
| name: wflow-interlink | ||
| cpu: '4.0' | ||
| memory: 6Gi | ||
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