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Jlibiada.iml

@@ -51,6 +51,7 @@
     <orderEntry type="library" name="HMM" level="project" />
     <orderEntry type="library" name="Rapidminer" level="project" />
     <orderEntry type="library" name="BioJava" level="project" />
+    <orderEntry type="library" name="Bio" level="project" />
   </component>
 </module>
 

resources/com/rapidminer/resources/OperatorsHMM.xml

@@ -35,6 +35,10 @@
                         <class>interval_analysis.chain.BuildingsGeneratorRM</class>
                     </operator>
                 </group>
+                <operator>
+                    <key>Buildings counter</key>
+                    <class>interval_analysis.chain.RMBuildingCounter</class>
+                </operator>
                 <operator>
                     <key>Mixed_converter</key>
                     <class>interval_analysis.chain.MixedConverterRM</class>

src/interval_analysis/chain/RMBuildingCounter.java

@@ -1,30 +1,76 @@
 package interval_analysis.chain;
 
+import com.rapidminer.example.Attributes;
+import com.rapidminer.example.Example;
+import com.rapidminer.example.ExampleSet;
+import com.rapidminer.example.ExampleSetFactory;
 import com.rapidminer.operator.Operator;
 import com.rapidminer.operator.OperatorDescription;
 import com.rapidminer.operator.OperatorException;
 import com.rapidminer.operator.ports.InputPort;
 import com.rapidminer.operator.ports.OutputPort;
+import com.rapidminer.parameter.ParameterType;
+import com.rapidminer.parameter.ParameterTypeString;
+import libiada.IntervalAnalysis.Buildings.BuildingCounter;
+
+import java.util.List;
+
 
 /**
  * Created by IntelliJ IDEA.
  * User: InquisitioN
- * Date: 26.03.2011
- * Time: 15:58:12
+ * Date: 22.04.2011
+ * Time: 19:28:54
  * To change this template use File | Settings | File Templates.
  */
+
 public class RMBuildingCounter extends Operator {
     private OutputPort outValue = getOutputPorts().createPort("Items");
-    private InputPort inChainLeight = getInputPorts().createPort("Leight");
-    private InputPort inChainPower = getInputPorts().createPort("Power");
+    private InputPort inChainData = getInputPorts().createPort("InputData");
+
+    public static final String PARAMETER_CHAIN_LENGTH = "ChainLength attribute name";
+    public static final String PARAMETER_ALPHABET_POWER = "AlphabetPower attribute name";
 
     public RMBuildingCounter(OperatorDescription description) {
         super(description);
     }
 
     @Override
     public void doWork() throws OperatorException {
-        RMChainSet Leight = inChainLeight.getData(RMChainSet.class);
-        RMChainSet Power = inChainPower.getData(RMChainSet.class);
+        ExampleSet ChainData = inChainData.getData();
+        Attributes attributes = ChainData.getAttributes();
+
+        String data[][]=new String [ChainData.size()][3];
+        int item = 0;
+        for (Example example : ChainData) {
+            Double L = Double.parseDouble(example.getValueAsString(attributes.get(getParameterAsString(PARAMETER_CHAIN_LENGTH))));
+            Double P = Double.parseDouble(example.getValueAsString(attributes.get(getParameterAsString(PARAMETER_ALPHABET_POWER))));
+
+            BuildingCounter counter = new BuildingCounter();
+            Integer count = 0;
+            try {
+                count = counter.calculate((int) Math.round(L), (int) Math.round(P));
+            } catch (Exception e) {
+                System.err.print("Error of calculating");
+            }
+
+            data[item][0] = L.toString();
+            data[item][1] = P.toString();
+            data[item][3] = count.toString();
+            item++;
+        }
+        ExampleSet outValueSet = ExampleSetFactory.createExampleSet(data);
+        outValueSet.getAttributes().get("att1").setName("Chain length");
+        outValueSet.getAttributes().get("att2").setName("Alphabet power");
+        outValueSet.getAttributes().get("att3").setName("Count");
+        outValue.deliver(outValueSet);
     }
+
+    @Override
+    public List<ParameterType> getParameterTypes() {
+        List<ParameterType> types = super.getParameterTypes();
+        types.add(new ParameterTypeString(PARAMETER_CHAIN_LENGTH, "ChainLength attribute name"));
+        types.add(new ParameterTypeString(PARAMETER_ALPHABET_POWER, "AlphabetPower attribute name"));
+        return types;
+        }
 }