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Implement pre-commit checks fixes #20

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merged 1 commit into from
Oct 19, 2023
Merged

Implement pre-commit checks fixes #20

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50 changes: 31 additions & 19 deletions cc_plugin_ugrid/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
import os
import logging

from compliance_checker.base import BaseNCCheck, Result

try:
Expand All @@ -10,13 +10,15 @@
logger = logging.getLogger(__name__)
logger.addHandler(logging.NullHandler())


class UgridException(Exception):
pass


class UgridChecker(BaseNCCheck):
_cc_spec = 'UGRID'
_cc_url = 'https://github.com/ioos/cc-plugin-ugrid'
_cc_author = 'Brian McKenna <[email protected]>'
_cc_spec = "UGRID"
_cc_url = "https://github.com/ioos/cc-plugin-ugrid"
_cc_author = "Brian McKenna <[email protected]>"
_cc_checker_version = __version__

@classmethod
Expand All @@ -43,26 +45,36 @@ def setup(self, ds):
ds : netCDF4 dataset object
"""


self.ds = ds
self.meshes = {
m:{} for m in self.ds.get_variables_by_attributes(
cf_role='mesh_topology'
)
m: {} for m in self.ds.get_variables_by_attributes(cf_role="mesh_topology")
}

for mesh in self.meshes.keys():
for att in ['boundary_node_coordinates', 'edge_coordinates',
'edge_dimension', 'edge_face_connectivity', 'edge_node_connectivity',
'face_coordinates', 'face_dimension', 'face_edge_coordinates',
'face_face_connectivity', 'face_node_connectivity', 'nedges', 'nfaces',
'node_coordinates', 'topology_dimension', 'volume_dimension',
'volume_edge_coordinates', 'volume_face_connectivity', 'volume_node_connectivity',
'volume_coordinates', 'volume_shape_type', 'volume_volume_connectivity'
]:

for att in [
"boundary_node_coordinates",
"edge_coordinates",
"edge_dimension",
"edge_face_connectivity",
"edge_node_connectivity",
"face_coordinates",
"face_dimension",
"face_edge_coordinates",
"face_face_connectivity",
"face_node_connectivity",
"nedges",
"nfaces",
"node_coordinates",
"topology_dimension",
"volume_dimension",
"volume_edge_coordinates",
"volume_face_connectivity",
"volume_node_connectivity",
"volume_coordinates",
"volume_shape_type",
"volume_volume_connectivity",
]:
try:
self.meshes[mesh][att] = mesh.getncattr(att)
except AttributeError: # NetCDF: Attribute not found
except AttributeError: # NetCDF: Attribute not found
self.meshes[mesh][att] = None

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