Switch to iRODS HTTP API #83
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, dev] | |
| pull_request: | |
| branches: [main, dev] | |
| name: render-rmarkdown | |
| jobs: | |
| render-rmarkdown: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup iRODS demo | |
| run: | | |
| cd ./inst/irods_demo | |
| git submodule sync --recursive | |
| git submodule update --init --force --recursive --remote | |
| docker compose up -d nginx-reverse-proxy irods-client-http-api irods-client-icommands | |
| sleep 5 | |
| docker exec irods-demo-irods-client-icommands-1 iadmin mkuser alice rodsuser | |
| docker exec irods-demo-irods-client-icommands-1 iadmin moduser alice password passWORD | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Cache packages | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.RENV_PATHS_ROOT }} | |
| key: ${{ runner.os }}-renv-${{ hashFiles('**/renv.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Restore packages | |
| shell: Rscript {0} | |
| run: | | |
| if (!requireNamespace("renv", quietly = TRUE)) install.packages("renv") | |
| renv::restore(repos = c(CRAN = "https://cloud.r-project.org")) | |
| if (!requireNamespace("readr", quietly = TRUE)) install.packages("readr") | |
| - name: Build rirods | |
| shell: Rscript {0} | |
| run: | | |
| if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools") | |
| devtools::install() | |
| - name: Render Rmarkdown files and Commit Results | |
| run: | | |
| PKG_PATH=$(pwd) | |
| Rscript -e "rmarkdown::render(file.path(getwd(), 'README.Rmd'), output_format = 'md_document')" | |
| git config --local user.name "$GITHUB_ACTOR" | |
| git config --local user.email "[email protected]" | |
| git commit ${PKG_PATH[*]/.Rmd/.md} -m 'Render README' || echo "No changes to commit" | |
| git push origin || echo "No changes to commit" |