Skip to content

Fix dolphin cli error for no arguments #172

Fix dolphin cli error for no arguments

Fix dolphin cli error for no arguments #172

Workflow file for this run

name: Pytest, build docker image, push to GHCR
on: [pull_request, push]
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref }}
cancel-in-progress: true
env:
# https://github.com/pytest-dev/pytest/issues/2042#issuecomment-429289164
PY_IGNORE_IMPORTMISMATCH: 1
jobs:
pytest:
strategy:
matrix:
os: [ubuntu-latest, macos-latest]
deps:
# Note: for now we're manually adding tophu deps,
# will change once it's on conda forge
- label: Latest
spec: >-
dask
rasterio
- label: Minimum
spec: >-
python=3.8
isce3
gdal=3.5
h5py=3.6
numpy=1.20
numba=0.54
pydantic=2.1
pymp-pypi=0.4.5
pyproj=3.3
rich=12.0
ruamel_yaml=0.15
scipy=1.5
shapely=1.8
threadpoolctl>=3.0
dask
rasterio
exclude: # TODO: Remove this once pymp is gone
- os: macos-latest
deps:
label: Latest
fail-fast: false
name: ${{ matrix.os }} • ${{ matrix.deps.label }}
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Setup environment
uses: mamba-org/setup-micromamba@v1
with:
environment-file: conda-env.yml
environment-name: dolphin-env
create-args: ${{ matrix.deps.spec }}
condarc: |
channels:
- conda-forge
- name: Install
run: |
pip install --no-deps .
- name: Install test dependencies
run: |
micromamba install -f tests/requirements.txt -c conda-forge
pip install --no-deps git+https://github.com/isce-framework/tophu@main
- name: Disable numba boundscheck for better error catching
run: |
echo "NUMBA_BOUNDSCHECK=1" >> $GITHUB_ENV
- name: Test (with numba boundscheck on)
run: |
pytest -n0
# https://community.codecov.com/t/numba-jitted-methods-are-not-captured-by-codecov/2649
# - name: Coverage report
# uses: codecov/codecov-action@v2
dockerize: # Based on Mintpy: https://github.com/insarlab/MintPy/blob/5ca554fef324b816f9130feec567e2cf463e41d2/.github/workflows/build-n-publish-to-pypi.yml
name: Build Docker image and push to GitHub Container Registry
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Set up Python 3.11
uses: actions/setup-python@v4
with:
python-version: '3.11'
- name: Set environment variables for docker build
run: |
pip install setuptools_scm # Install setuptools_scm to get version number
# Save version number from CLI
version=$(python -m setuptools_scm)
sanitized_version=${version//+/-} # Replace all '+' with '-'
echo "DOLPHIN_VERSION=${sanitized_version}" >> $GITHUB_ENV
- name: Login to GitHub Container Registry
uses: docker/login-action@v2
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- name: Build, tag, and push image to Github Container Registry
uses: docker/build-push-action@v4
with:
context: .
file: ./docker/Dockerfile
push: ${{ github.event_name != 'pull_request' }}
tags: |
ghcr.io/${{ github.repository }}:${{ env.DOLPHIN_VERSION }}
labels: |
org.opencontainers.image.created=${{ env.CI_JOB_TIMESTAMP }}
org.opencontainers.image.version=${{ env.DOLPHIN_VERSION }}
org.opencontainers.image.revision=${{ github.sha }}
- name: Add develop tag
if: github.ref == 'refs/heads/main'
uses: akhilerm/[email protected]
with:
src: ghcr.io/${{ github.repository }}:${{ env.DOLPHIN_VERSION }}
dst: ghcr.io/${{ github.repository }}:develop
- name: Add latest tag
if: startsWith(github.ref, 'refs/tags/v')
uses: akhilerm/[email protected]
with:
src: ghcr.io/${{ github.repository }}:${{ env.DOLPHIN_VERSION }}
dst: ghcr.io/${{ github.repository }}:latest