updated

CHANGELOG.md

@@ -6,7 +6,8 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## Unreleased
-- Added ```fhir_utils.py``` function for ```fastapi.py``` data conversion
+- Added ```fhir_parser.py``` function covering code extraction from FHIR Observation, Condition, and Bundle resources ```/fhir/parse/resource``` (singular resource) and ```/fhir/parse/bundle``` (bundle resource)
+- Added FastAPI endpoint function triggering ```batchconvert``` function ```/iderare/batchconvert```
 
 ## [v0.5.0](https://github.com/ivanwilliammd/iderare-pheno/releases/tag/v0.5.0) - 2024-04-10
 - Added ```omim2name``` function and ```streamlit_utils.py``` to accomodate Streamlit app

iderare_pheno/fhir_utils.py → iderare_pheno/fhir_parser.py

@@ -1,8 +1,10 @@
 from typing import List, Union
 
-from fastapi import FastAPI, HTTPException, Response
+from fastapi import FastAPI, HTTPException, Request, Response
 from pydantic import BaseModel
 
+from iderare_pheno.converter import batchconvert
+
 app = FastAPI()
 
 class Coding(BaseModel):
@@ -89,4 +91,10 @@ async def fhir_batch_parse(bundle: Bundle) -> Response:
 
 @app.post("/fhir/parse/resource")
 async def fhir_parse(resource: Union[Observation, Condition]) -> Response:
-    return {"result" : resource_object(resource, resource.resourceType)}
+    return {"result" : resource_object(resource, resource.resourceType)}
+
+
+@app.post("/iderare/batchconvert")
+async def iderare_batch_convert(data: List[str]) -> Response:
+    hpo_sets, diagnosis_sets = batchconvert(data)
+    return {"hpo_sets" : hpo_sets, "diagnosis_sets" : diagnosis_sets}