load_analysis was only on postgres

samples/oracle/load_analysis.sh

@@ -0,0 +1,44 @@
+#!/bin/bash
+
+set -x
+set -e
+
+if [ -z "$KETTLE_HOME" ]; then
+	echo "KETTLE_HOME is not set"
+	exit 1
+fi
+if [ -z "$DATA_LOCATION" ]; then
+	echo "DATA_LOCATION is not set"
+	exit 1
+fi
+
+# $KETTLE_HOME should have been set by the caller
+export KETTLE_HOME
+
+# Should define ANALYSIS_DATA_FILENAME, ANALYSIS_FILENAME, COHORTS_FILENAME,
+# SAMPLES_FILENAME, STUDY_DATA_CATEGORY AND STUDY_DISPLAY_CATEGORY
+source $1
+
+# the ETL script insist on interpreting LOG_FILENAME as a relative path...
+if [ -h $DATA_LOCATION/logs ]; then
+	rm $DATA_LOCATION/logs
+fi
+ln -s `pwd`/logs $DATA_LOCATION/logs
+
+$KITCHEN -norep=Y                                                \
+-file=$KETTLE_JOBS/ETL.search.process_analysis_data.kjb          \
+-log=logs/search.process_analysis_data_$(date +"%Y%m%d%H%M").log \
+-param:DATA_LOCATION="$DATA_LOCATION"                            \
+-param:ANALYSIS_DATA_FILENAME="$ANALYSIS_DATA_FILENAME"          \
+-param:ANALYSIS_FILENAME="$ANALYSIS_FILENAME"                    \
+-param:COHORTS_FILENAME="$COHORTS_FILENAME"                      \
+-param:LOG_FILENAME=logs/search.process_analysis_data_e          \
+-param:SAMPLES_FILENAME="$SAMPLES_FILENAME"                      \
+-param:STUDY_ID="$STUDY_ID"                                      \
+-param:SORT_DIR=/tmp                                             \
+-param:STUDY_DATA_CATEGORY="$STUDY_DATA_CATEGORY"                \
+-param:STUDY_DISPLAY_CATEGORY="$STUDY_DISPLAY_CATEGORY"
+
+echo -e '\e[32mDONE\e[m Do not forget to reindex Solr'
+
+rm $DATA_LOCATION/logs