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  1. LocusMasterTE LocusMasterTE Public

    Integrating long read sequencing enhances short read-based locus-specific transposable element quantification

    Python 7

  2. gghic gghic Public

    gghic

    R 5

  3. TMB TMB Public

    Tumour mutation burden correction

    2 1

  4. RNAseq-analysis-pipeline RNAseq-analysis-pipeline Public

    This guidebook aims to demonstrate the RNA-seq analysis pipeline and the basics statistical analysis behind Differential Gene expression detection

    Jupyter Notebook 2 2

  5. smk_sv smk_sv Public

    A snakemake pipeline to call structure variants from ONT data

    Python 2

  6. HKU-Practical-Bioinformatics HKU-Practical-Bioinformatics Public

    HTML 1

Repositories

Showing 10 of 16 repositories
  • biof2014 Public

    Week 13 tutorial

    0 0 0 0 Updated Apr 21, 2025
  • gghic Public

    gghic

    R 5 GPL-3.0 0 1 0 Updated Apr 7, 2025
  • LocusMasterTE Public

    Integrating long read sequencing enhances short read-based locus-specific transposable element quantification

    Python 7 MIT 0 2 0 Updated Feb 10, 2025
  • LocusMasterTE_paper Public

    Scripts for figures and results in LocusMasterTE paper

    R 0 MIT 0 0 0 Updated Feb 1, 2025
  • SpecAlign Public

    Windows version for processing and alignment of mass spectra datasets.

    C++ 0 Apache-2.0 0 0 0 Updated Jan 30, 2025
  • smk_sv Public

    A snakemake pipeline to call structure variants from ONT data

    Python 2 0 0 0 Updated Dec 15, 2024
  • HTML 1 0 0 0 Updated Nov 14, 2024
  • ERCC2 Public

    Scripts for Barbour et al. ERCC2 mutations alter the genomic distribution pattern of somatic mutations and are independently prognostic in bladder cancer

    HTML 0 GPL-3.0 0 0 0 Updated Jul 7, 2024
  • withings_api_dev Public

    Template for flask application to access Withings API

    Python 0 0 0 1 Updated May 21, 2024
  • Jupyter Notebook 0 0 0 0 Updated Feb 28, 2024