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Linter: Avoid processing empty streams
When a linter returns an empty stream, it should not be processed. In the case of process_output_corrected, processing it is extremely destructive, zero-ing the file. In the other modes, there is no output to be processed, so it is merely wasted processing. Also emit warnings for any messages found on a stream which is not being processed. Followup enhancements might add ways for linter bears to skip known messages where a linter is noisy. Fixes coala#5415
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