Move get_fasta_hdas_by_history into services #606
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name: Toolshed tests | |
on: | |
push: | |
paths-ignore: | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
pull_request: | |
paths-ignore: | |
- 'doc/**' | |
- 'lib/galaxy_test/selenium/**' | |
env: | |
GALAXY_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/galaxy?client_encoding=utf8' | |
TOOL_SHED_TEST_DBURI: 'postgresql://postgres:postgres@localhost:5432/toolshed?client_encoding=utf8' | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
test: | |
name: Test | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ['3.7'] | |
services: | |
postgres: | |
image: postgres:13 | |
env: | |
POSTGRES_USER: postgres | |
POSTGRES_PASSWORD: postgres | |
POSTGRES_DB: postgres | |
ports: | |
- 5432:5432 | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
path: 'galaxy root' | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Get full Python version | |
id: full-python-version | |
shell: bash | |
run: echo "version=$(python -c 'import sys; print("-".join(str(v) for v in sys.version_info))')" >> $GITHUB_OUTPUT | |
- name: Cache pip dir | |
uses: actions/cache@v3 | |
id: pip-cache | |
with: | |
path: ~/.cache/pip | |
key: pip-cache-${{ matrix.python-version }}-${{ hashFiles('galaxy root/requirements.txt') }} | |
- name: Cache galaxy venv | |
uses: actions/cache@v3 | |
with: | |
path: 'galaxy root/.venv' | |
key: gxy-venv-${{ runner.os }}-${{ steps.full-python-version.outputs.version }}-${{ hashFiles('galaxy root/requirements.txt') }}-toolshed | |
- name: Run tests | |
run: './run_tests.sh -toolshed' | |
working-directory: 'galaxy root' | |
- uses: actions/upload-artifact@v3 | |
if: failure() | |
with: | |
name: Toolshed test results (${{ matrix.python-version }}) | |
path: 'galaxy root/run_toolshed_tests.html' |