refactor: use zarrita classes in zarr-python [wip] #2
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Linux Testing | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11'] | |
| numpy_version: ['>=1.22.0', '==1.20.*'] | |
| exclude: | |
| - python-version: '3.10' | |
| numpy_version: '==1.20.*' | |
| - python-version: '3.11' | |
| numpy_version: '==1.20.*' | |
| services: | |
| redis: | |
| image: redis | |
| # Set health checks to wait until redis has started | |
| options: >- | |
| --health-cmd "redis-cli ping" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 6379:6379 | |
| mongodb: | |
| image: mongo:4.4.11 | |
| ports: | |
| - 27017:27017 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| channels: conda-forge | |
| python-version: ${{ matrix.python-version }} | |
| env: | |
| ACTIONS_ALLOW_UNSECURE_COMMANDS: true | |
| # Runs a set of commands using the runners shell | |
| - name: Create Conda environment with the rights deps | |
| shell: "bash -l {0}" | |
| run: | | |
| conda create -n zarr-env python==${{matrix.python-version}} bsddb3 numcodecs lmdb pip nodejs flake8 mypy | |
| conda activate zarr-env | |
| npm install -g azurite | |
| - name: Install dependencies | |
| shell: "bash -l {0}" | |
| run: | | |
| conda activate zarr-env | |
| python -m pip install --upgrade pip | |
| python -m pip install -U pip setuptools wheel line_profiler | |
| python -m pip install -rrequirements_dev_minimal.txt numpy${{matrix.numpy_version}} -rrequirements_dev_optional.txt pymongo redis | |
| python -m pip install . | |
| python -m pip freeze | |
| - name: Tests | |
| shell: "bash -l {0}" | |
| env: | |
| COVERAGE_FILE: .coverage.${{matrix.python-version}}.${{matrix.numpy_version}} | |
| ZARR_TEST_ABS: 1 | |
| ZARR_TEST_MONGO: 1 | |
| ZARR_TEST_REDIS: 1 | |
| ZARR_V3_EXPERIMENTAL_API: 1 | |
| ZARR_V3_SHARDING: 1 | |
| run: | | |
| conda activate zarr-env | |
| mkdir ~/blob_emulator | |
| azurite -l ~/blob_emulator --debug debug.log 2>&1 > stdouterr.log & | |
| pytest --cov=zarr --cov-config=pyproject.toml --doctest-plus --cov-report xml --cov=./ --timeout=300 | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # not required for public repos | |
| #files: ./coverage1.xml,./coverage2.xml # optional | |
| #flags: unittests # optional | |
| #name: codecov-umbrella # optional | |
| #fail_ci_if_error: true # optional (default = false) | |
| verbose: true # optional (default = false) |