BLINK

This is the R version of BLINK model. You can find the C version here

Installation

install.packages("devtools")

devtools::install_github("YaoZhou89/BLINK")

Demo Data

BLINK R version only support numeric data type.

Usage

# source functions needed

source("http://zzlab.net/GAPIT/gapit_functions.txt")

source("http://zzlab.net/FarmCPU/FarmCPU_functions.txt")

library(BLINK)

# genotype information data

myGM=read.table("myData.map",head=T)

# genotype data

myGD=read.big.matrix("myData.dat",head=F,sep="\t",type="char") 

# phenotype data

myY = read.table("myData.txt",head = T) 

# association analysis

myBlink=Blink(Y=myY,GD=myGD,GM=myGM,maxLoop=10,time.cal=T) 

# more features

More parameters explained here

Issues

Bugs could be reported here

The license notice

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

Author

Dr. Yao Zhou ([email protected])