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jj-umn/ontology_lookup_client
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ontology_lookup_client ====================== Client application to retrieve entries from the EBI ontology web service: http://www.ebi.ac.uk/ontology-lookup/ This uses the OLS SOAP Demo client (java): http://www.ebi.ac.uk/ontology-lookup/ols-client.tar.gz The application will retrieves ontology entries and output a 3 column tabular file, e.g. : BTO [ BTO, BTO:0000608, liver adenocarcinoma cell, ] BTO:0000608 liver adenocarcinoma cell BTO [ BTO, BTO:0000578, hepatoma cell line, ] BTO:0000578 liver adenocarcinoma cell; hepatoma cell line The columns are: 1. The ontology ID 2. A triplet with: [ Ontology, EntryID, description ] 3. The EntryID followed by semicolon-separated list of descriptions in the hierarchical ontology path to this entry The proetomeXchange submission file uses the value in column 2: http://www.proteomexchange.org/sites/proteomexchange.org/files/documents/proteomexchange_submission_summary_version_2.0.pdf This output can be used in a Galaxy select parameter from either a dataset or tool-data .loc file
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Client application to retrieve entries from the EBI ontology web service.
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