Sparse-Input Neural Network

Jean Feng and Noah Simon. "Sparse-Input Neural Networks for High-dimensional Nonparametric Regression and Classification." https://arxiv.org/abs/1711.07592

Note: For the latest iteration of this work, see Jean Feng and Noah Simon. "Ensembled sparse-input hierarchical networks for high-dimensional datasets." https://arxiv.org/abs/2005.04834

Installation:

Install Tensorflow (python).

Code was run using python 3.4.3

Primary files:

• read_data.py: make a dataset in the correct format
• fit_spinn.py: main file for fitting SPINN!
• fit_<other_methods>.py: fit using other methods

Simulations and data analyses

Each folder specifies the simulation or data analyses. Each folder is associated with its own plotting code via plot_<folder_name>.py. To run the simulations/data analyses, use scons.

Note: process_peptide_binding.py: Processes data downloaded from https://github.com/openvax/mhcflurry