Merge version number bump and NEWS file from master

jkbonfield · Apr 7, 2022 · 52f10df · 52f10df
2 parents fb22684 + 6811ac5
commit 52f10df
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diff --git a/NEWS b/NEWS
@@ -1,6 +1,30 @@
 Noteworthy changes in release a.b
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
+Noteworthy changes in release 1.15.1 (7th April 2022)
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+* Security fix: Fixed broken error reporting in the sam_cap_mapq()
+  function, due to a missing hts_log() parameter.  Prior to this fix
+  it was possible to abuse the log message format string by passing
+  a specially crafted alignment record to this function. (PR#1406)
+
+* HTSlib now uses libhtscodecs release 1.2.2.  This fixes a number
+  of bugs where invalid compressed data could trigger usage of
+  uninitialised values. (PR#1416)
+
+* Fixed excessive memory used by multi-threaded SAM output on
+  long reads. (Part of PR#1384)
+
+* Fixed a bug where tabix would misinterpret region specifiers
+  starting at position 0.  It will also now warn if the file
+  being indexed is supposed to be 1-based but has positions
+  less than or equal to 0. (PR#1411)
+
+* The VCF header parser will now issue a warning if it finds an
+  INFO header with Type=Flag but Number not equal to 0.  It will
+  also ignore the incorrect Number so the flag can be used. (PR#1415)
+
 Noteworthy changes in release 1.15 (21st February 2022)
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 

diff --git a/bgzip.1 b/bgzip.1
@@ -1,4 +1,4 @@
-.TH bgzip 1 "21 February 2022" "htslib-1.15" "Bioinformatics tools"
+.TH bgzip 1 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools"
 .SH NAME
 .PP
 bgzip \- Block compression/decompression utility

diff --git a/htsfile.1 b/htsfile.1
@@ -1,4 +1,4 @@
-.TH htsfile 1 "21 February 2022" "htslib-1.15" "Bioinformatics tools"
+.TH htsfile 1 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools"
 .SH NAME
 htsfile \- identify high-throughput sequencing data files
 .\"

diff --git a/htslib-s3-plugin.7 b/htslib-s3-plugin.7
@@ -1,4 +1,4 @@
-.TH htslib-s3-plugin 7 "21 February 2022" "htslib-1.15" "Bioinformatics tools"
+.TH htslib-s3-plugin 7 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools"
 .SH NAME
 s3 plugin \- htslib AWS S3 plugin
 .\"

diff --git a/tabix.1 b/tabix.1
@@ -1,4 +1,4 @@
-.TH tabix 1 "21 February 2022" "htslib-1.15" "Bioinformatics tools"
+.TH tabix 1 "7 April 2022" "htslib-1.15.1" "Bioinformatics tools"
 .SH NAME
 .PP
 tabix \- Generic indexer for TAB-delimited genome position files

diff --git a/version.sh b/version.sh
@@ -24,7 +24,7 @@
 # DEALINGS IN THE SOFTWARE.
 
 # Master version, for use in tarballs or non-git source copies
-VERSION=1.15
+VERSION=1.15.1
 
 # If we have a git clone, then check against the current tag
 srcdir=${0%/version.sh}