Skip to content
@jmf-vienna

Joint Microbiome Facility (JMF)

Joint Microbiome Facility of the Medical University of Vienna and the University of Vienna

Pinned Loading

  1. workflows workflows Public

    This repository contains dependency-independent workflows that can be shared and used on Joint Microbiome Facility generated data.

    Python

  2. jmf-r jmf-r Public

    JMF R utility functions

    R

  3. amplicon-demux amplicon-demux Public

    JMF amplicon demultiplexing pipeline

    Python

  4. amplicon-post-clust amplicon-post-clust Public

    JMF amplicon analysis pipeline: post clustering processing

    R

  5. amplicon-classify amplicon-classify Public

    JMF amplicon analysis pipeline: taxonomic classification

    R

  6. amplicon-analysis amplicon-analysis Public

    JMF amplicon analysis pipeline

    R

Repositories

Showing 9 of 9 repositories
  • amplicon-swarm Public

    JMF amplicon clustering pipeline using swarm

    jmf-vienna/amplicon-swarm’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 9, 2025
  • amplicon-analysis Public

    JMF amplicon analysis pipeline

    jmf-vienna/amplicon-analysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 7, 2025
  • amplicon-demux Public

    JMF amplicon demultiplexing pipeline

    jmf-vienna/amplicon-demux’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 17, 2025
  • amplicon-post-clust Public

    JMF amplicon analysis pipeline: post clustering processing

    jmf-vienna/amplicon-post-clust’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 17, 2025
  • ONT-AmpSeq Public Forked from MathiasEskildsen/ONT-AmpSeq

    Snakemake workflow to generate OTU tables from barcoded ONT data

    jmf-vienna/ONT-AmpSeq’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Mar 10, 2025
  • amplicon-classify Public

    JMF amplicon analysis pipeline: taxonomic classification

    jmf-vienna/amplicon-classify’s past year of commit activity
    R 0 MIT 0 0 0 Updated Feb 25, 2025
  • workflows Public

    This repository contains dependency-independent workflows that can be shared and used on Joint Microbiome Facility generated data.

    jmf-vienna/workflows’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 4, 2024
  • jmf-r Public

    JMF R utility functions

    jmf-vienna/jmf-r’s past year of commit activity
    R 0 0 0 0 Updated Aug 13, 2024
  • biobakery_workflows Public

    Customized bioBakery workflows docker image

    jmf-vienna/biobakery_workflows’s past year of commit activity
    Dockerfile 0 MIT 0 0 0 Updated Aug 9, 2022

Top languages

Loading…

Most used topics

Loading…