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Missed some double-quotes
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ns-rse committed Oct 16, 2023
1 parent e9b1607 commit befe797
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions src/skan/pipe.py
Original file line number Diff line number Diff line change
Expand Up @@ -87,7 +87,7 @@ def process_images(
brightness_offset,
scale_metadata_path,
crop_radius=0,
smooth_method="Gaussian",
smooth_method='Gaussian',
num_threads=CPU_COUNT,
):
"""Full pipeline from images to skeleton stats with local median threshold.
Expand Down Expand Up @@ -150,7 +150,7 @@ def process_images(
)
image_stats['filename'] = filename
image_stats['branch density'] = (
framedata.shape[0] / image_stats["area"]
framedata.shape[0] / image_stats['area']
)
j2j = framedata[framedata['branch_type'] == 2]
image_stats['mean J2J branch distance'] = (
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