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jni committed Dec 13, 2024
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2 changes: 1 addition & 1 deletion dev/.buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: c2154435a1f5c01ee00dc35951bec5bc
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10 changes: 5 additions & 5 deletions dev/_modules/index.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>Overview: module code &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



Expand Down Expand Up @@ -39,7 +39,7 @@
<link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../_static/documentation_options.js?v=dea11830"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/clipboard.min.js?v=a7894cd8"></script>
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<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


Expand Down Expand Up @@ -117,7 +117,7 @@



<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

</a></div>

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14 changes: 7 additions & 7 deletions dev/_modules/skan/csr.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>skan.csr &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>skan.csr &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



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<link rel="preload" as="script" href="../../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../../_static/documentation_options.js?v=dea11830"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
Expand All @@ -48,14 +48,14 @@
<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../../genindex.html" />
<link rel="search" title="Search" href="../../search.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


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<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

</a></div>

Expand Down Expand Up @@ -597,7 +597,7 @@ <h1>Source code for skan.csr</h1><div class="highlight"><pre>
<span class="n">csr</span><span class="o">.</span><span class="n">indices</span><span class="p">,</span>
<span class="n">csr</span><span class="o">.</span><span class="n">data</span><span class="p">,</span>
<span class="n">np</span><span class="o">.</span><span class="n">array</span><span class="p">(</span><span class="n">csr</span><span class="o">.</span><span class="n">shape</span><span class="p">,</span> <span class="n">dtype</span><span class="o">=</span><span class="n">np</span><span class="o">.</span><span class="n">int32</span><span class="p">),</span>
<span class="n">node_props</span><span class="p">,</span>
<span class="n">node_props</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">),</span>
<span class="p">)</span>


Expand Down Expand Up @@ -917,7 +917,7 @@ <h1>Source code for skan.csr</h1><div class="highlight"><pre>
<span class="k">if</span> <span class="n">np</span><span class="o">.</span><span class="n">issubdtype</span><span class="p">(</span><span class="n">skeleton_image</span><span class="o">.</span><span class="n">dtype</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">floating</span><span class="p">):</span>
<span class="bp">self</span><span class="o">.</span><span class="n">pixel_values</span> <span class="o">=</span> <span class="n">skeleton_image</span><span class="p">[</span><span class="n">coords</span><span class="p">]</span>
<span class="k">elif</span> <span class="n">np</span><span class="o">.</span><span class="n">issubdtype</span><span class="p">(</span><span class="n">skeleton_image</span><span class="o">.</span><span class="n">dtype</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">integer</span><span class="p">):</span>
<span class="bp">self</span><span class="o">.</span><span class="n">pixel_values</span> <span class="o">=</span> <span class="n">skeleton_image</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="nb">float</span><span class="p">)[</span><span class="n">coords</span><span class="p">]</span>
<span class="bp">self</span><span class="o">.</span><span class="n">pixel_values</span> <span class="o">=</span> <span class="n">skeleton_image</span><span class="o">.</span><span class="n">astype</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)[</span><span class="n">coords</span><span class="p">]</span>
<span class="k">else</span><span class="p">:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">pixel_values</span> <span class="o">=</span> <span class="kc">None</span>
<span class="bp">self</span><span class="o">.</span><span class="n">graph</span> <span class="o">=</span> <span class="n">graph</span>
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10 changes: 5 additions & 5 deletions dev/_modules/skan/draw.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>skan.draw &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>skan.draw &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



Expand Down Expand Up @@ -39,7 +39,7 @@
<link rel="preload" as="script" href="../../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../../_static/documentation_options.js?v=dea11830"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
Expand All @@ -48,14 +48,14 @@
<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../../genindex.html" />
<link rel="search" title="Search" href="../../search.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


Expand Down Expand Up @@ -117,7 +117,7 @@



<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

</a></div>

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10 changes: 5 additions & 5 deletions dev/_modules/skan/pipe.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>skan.pipe &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>skan.pipe &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



Expand Down Expand Up @@ -39,7 +39,7 @@
<link rel="preload" as="script" href="../../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../../_static/documentation_options.js?v=dea11830"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
Expand All @@ -48,14 +48,14 @@
<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../../genindex.html" />
<link rel="search" title="Search" href="../../search.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


Expand Down Expand Up @@ -117,7 +117,7 @@



<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

</a></div>

Expand Down
10 changes: 5 additions & 5 deletions dev/_modules/skan/pre.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>skan.pre &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>skan.pre &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



Expand Down Expand Up @@ -39,7 +39,7 @@
<link rel="preload" as="script" href="../../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../../_static/documentation_options.js?v=dea11830"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
Expand All @@ -48,14 +48,14 @@
<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../../genindex.html" />
<link rel="search" title="Search" href="../../search.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


Expand Down Expand Up @@ -117,7 +117,7 @@



<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

</a></div>

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2 changes: 1 addition & 1 deletion dev/_static/documentation_options.js
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@@ -1,5 +1,5 @@
const DOCUMENTATION_OPTIONS = {
VERSION: '0.12.1',
VERSION: '0.1.dev1+g207383e',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
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10 changes: 5 additions & 5 deletions dev/api/api.html
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>Skan API Reference &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>Skan API Reference &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



Expand Down Expand Up @@ -40,7 +40,7 @@
<link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../_static/documentation_options.js?v=dea11830"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/clipboard.min.js?v=a7894cd8"></script>
Expand All @@ -49,7 +49,7 @@
<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../genindex.html" />
Expand All @@ -58,7 +58,7 @@
<link rel="prev" title="Display 3D skeletons in napari" href="../examples/visualizing_3d_skeletons.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


Expand Down Expand Up @@ -120,7 +120,7 @@



<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

</a></div>

Expand Down
10 changes: 5 additions & 5 deletions dev/api/skan.csr.html
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>skan.csr: CSR Graph representation of skeletons &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>skan.csr: CSR Graph representation of skeletons &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



Expand Down Expand Up @@ -40,7 +40,7 @@
<link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../_static/documentation_options.js?v=dea11830"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/clipboard.min.js?v=a7894cd8"></script>
Expand All @@ -49,7 +49,7 @@
<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../genindex.html" />
Expand All @@ -58,7 +58,7 @@
<link rel="prev" title="Skan API Reference" href="api.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
<meta name="docsearch:language" content="en"/>
<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


Expand Down Expand Up @@ -120,7 +120,7 @@



<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

</a></div>

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10 changes: 5 additions & 5 deletions dev/api/skan.draw.html
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />

<title>skan.draw: Skeleton visualisation &#8212; Skan 🦴📏 0.12.1 documentation</title>
<title>skan.draw: Skeleton visualisation &#8212; Skan 🦴📏 0.1.dev1+g207383e documentation</title>



Expand Down Expand Up @@ -40,7 +40,7 @@
<link rel="preload" as="script" href="../_static/scripts/bootstrap.js?digest=26a4bc78f4c0ddb94549" />
<link rel="preload" as="script" href="../_static/scripts/pydata-sphinx-theme.js?digest=26a4bc78f4c0ddb94549" />

<script src="../_static/documentation_options.js?v=c5b435e8"></script>
<script src="../_static/documentation_options.js?v=dea11830"></script>
<script src="../_static/doctools.js?v=9a2dae69"></script>
<script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../_static/clipboard.min.js?v=a7894cd8"></script>
Expand All @@ -49,7 +49,7 @@
<script>
DOCUMENTATION_OPTIONS.theme_version = '0.16.0';
DOCUMENTATION_OPTIONS.theme_switcher_json_url = 'https://skeleton-analysis.org/dev/_static/version_switcher.json';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.12.x';
DOCUMENTATION_OPTIONS.theme_switcher_version_match = '0.1.dev1+g207383e';
DOCUMENTATION_OPTIONS.show_version_warning_banner = false;
</script>
<link rel="index" title="Index" href="../genindex.html" />
Expand All @@ -58,7 +58,7 @@
<link rel="prev" title="skan.csr: CSR Graph representation of skeletons" href="skan.csr.html" />
<meta name="viewport" content="width=device-width, initial-scale=1"/>
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<meta name="docsearch:version" content="0.12.1" />
<meta name="docsearch:version" content="0.1.dev1+g207383e" />
</head>


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<p class="title logo__title">Skan 🦴📏 0.12.1 documentation</p>
<p class="title logo__title">Skan 🦴📏 0.1.dev1+g207383e documentation</p>

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