Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support for generalized UniFrac (again) #528

Open
wants to merge 11 commits into
base: master
Choose a base branch
from
Open

Support for generalized UniFrac (again) #528

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
11 commits
Select commit Hold shift + click to select a range
c4c7354
Fixed a typo
fangly Sep 18, 2015
38a3d15
Tidied up the mixture of space- and tab- indentations with formatR
fangly Sep 18, 2015
202c274
Require the GUniFrac package
fangly Sep 18, 2015
80aef4f
Making room for gUniFrac method
fangly Sep 18, 2015
9de866e
gunifrac distances added
fangly Sep 18, 2015
4308d43
Added link for 'gunifrac' method
fangly Sep 18, 2015
f68102c
Added documentation for generalized UniFrac
fangly Sep 18, 2015
9e70513
Updated the bibliography
fangly Sep 18, 2015
beb68b1
Tests for generalized UniFrac
fangly Sep 18, 2015
49a964a
Making GUniFrac an optional dependency
fangly Sep 19, 2015
eee8e93
Reverting formatR cleanup for all files except for distance calculation
fangly Sep 19, 2015
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 4 additions & 3 deletions DESCRIPTION
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,9 +12,9 @@ Author: Paul J. McMurdie <[email protected]>,
contributions from Gregory Jordan and Scott Chamberlain
License: AGPL-3
Imports:
BiocGenerics (>= 0.14.0),
ade4 (>= 1.7.2),
ape (>= 3.1.1),
BiocGenerics (>= 0.14.0),
biom (>= 0.3.9),
Biostrings (>= 2.28.0),
cluster (>= 1.14.4),
Expand All @@ -33,8 +33,9 @@ Depends:
R (>= 3.1.0)
Suggests:
genefilter (>= 1.42.0),
testthat (>= 0.8),
knitr (>= 1.3)
GUniFrac (>= 1.0),
knitr (>= 1.3),
testthat (>= 0.8)
VignetteBuilder: knitr
Enhances: doParallel (>= 1.0.1)
biocViews: Sequencing, Microbiome, Metagenomics,
Expand Down
Loading